| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064353m |
| Family | GT47 |
| Protein Properties | Length: 468 Molecular Weight: 51812.1 Isoelectric Point: 9.4791 |
| Chromosome | Chromosome/Scaffold: 022150 Start: 2515 End: 5086 |
| Description | exostosin family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 87 | 404 | 0 |
| AAVRVFMYDLPPEFHFGLLGWSPPSPGSVWPDLTNDAAAPPPRYPGGLNQQHSVAYWLTLDLLSSSSAPCGAAVRVADPRDADLVFVPFFASLSYNRHSR PVPPEKVSRDKALQEKLVMYLSARLEWKRYGGADHVIVAHHPNSLLHARAVLSPAVFVLSDFGRYHPRVASLEKDVIAPYKHMAKTFVNDSAGFDHRPTL LYFRGAIYRKEGGSIRQELYYMLKDEKDVYFSFGSVQDHGASKASQGMHSSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDDIELPYEDVLDYSKFSIF VRSSDAVKKGYLMRLISG | |||
| Full Sequence |
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| Protein Sequence Length: 468 Download |
| MARTLLLPLA ATTVLVASTI FLFAAAGARW RPADTGLLVP PRAVSVPVTA SASSNTTGAR 60 KELSFLDENG GPDDPGSGAA RCDPRAAAVR VFMYDLPPEF HFGLLGWSPP SPGSVWPDLT 120 NDAAAPPPRY PGGLNQQHSV AYWLTLDLLS SSSAPCGAAV RVADPRDADL VFVPFFASLS 180 YNRHSRPVPP EKVSRDKALQ EKLVMYLSAR LEWKRYGGAD HVIVAHHPNS LLHARAVLSP 240 AVFVLSDFGR YHPRVASLEK DVIAPYKHMA KTFVNDSAGF DHRPTLLYFR GAIYRKEGGS 300 IRQELYYMLK DEKDVYFSFG SVQDHGASKA SQGMHSSKFC LNIAGDTPSS NRLFDAIVSH 360 CVPVIISDDI ELPYEDVLDY SKFSIFVRSS DAVKKGYLMR LISGVSKEQW TRMWNRLKEV 420 DKHFEYQYPS QKDDAVQMIW QALARRVPAI QLKVHRSSRF SRSDRGK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-51 | 89 | 394 | 316 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA91286.2 | 0 | 27 | 466 | 30 | 474 | secondary cell wall-related glycosyltransferase family 47, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC67582.1 | 0 | 27 | 466 | 30 | 481 | hypothetical protein OsI_34941 [Oryza sativa Indica Group] |
| GenBank | EEE52679.1 | 0 | 40 | 467 | 96 | 528 | hypothetical protein OsJ_35064 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066040.1 | 0 | 27 | 467 | 30 | 475 | Os12g0124400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151894.1 | 0 | 29 | 467 | 31 | 488 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
