Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064428m |
Family | CBM43 |
Protein Properties | Length: 344 Molecular Weight: 37298.7 Isoelectric Point: 4.6717 |
Chromosome | Chromosome/Scaffold: 0226003 Start: 189 End: 1978 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 257 | 339 | 2.6e-33 |
WCIASANASETDLQNALNWACGPGNVDCSAIQPSQPCYQPDTLASHASYAFNSYYQQNGASVVACDFGGAGVRTTKDPSYDTC | |||
GH17 | 2 | 235 | 0 |
ITYITVGAEVTESTVNASALVVPAMRNVHTALKKAGLHKKITISSTHSLGILSQSFPPSAGAFNSSYAYFLKPMLEFLVENQAPFMVDLYPYYAYQNSPS NVSLNYALFSPQSQDVIDPNTGLVYSNMFDAQVDSIFFALMALNFKTLKIMVTESGWPNKGAAKETGATPDNAQTYNTNLIRHVVNDSGTPAKPGEEIDV YIFSLFNENRKPGIESERNWGLFFPDKSSIYSLD |
Full Sequence |
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Protein Sequence Length: 344 Download |
MITYITVGAE VTESTVNASA LVVPAMRNVH TALKKAGLHK KITISSTHSL GILSQSFPPS 60 AGAFNSSYAY FLKPMLEFLV ENQAPFMVDL YPYYAYQNSP SNVSLNYALF SPQSQDVIDP 120 NTGLVYSNMF DAQVDSIFFA LMALNFKTLK IMVTESGWPN KGAAKETGAT PDNAQTYNTN 180 LIRHVVNDSG TPAKPGEEID VYIFSLFNEN RKPGIESERN WGLFFPDKSS IYSLDWTGRG 240 NVDVMTGANI TNANGTWCIA SANASETDLQ NALNWACGPG NVDCSAIQPS QPCYQPDTLA 300 SHASYAFNSY YQQNGASVVA CDFGGAGVRT TKDPSYDTCV FLAA |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG5309 | COG5309 | 0.001 | 151 | 228 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
pfam07983 | X8 | 1.0e-22 | 256 | 328 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. |
smart00768 | X8 | 6.0e-42 | 256 | 341 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
pfam00332 | Glyco_hydro_17 | 4.0e-78 | 2 | 235 | 234 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28065.1 | 0 | 1 | 344 | 110 | 453 | unknown [Zea mays] |
GenBank | EAZ13481.1 | 0 | 1 | 344 | 107 | 450 | hypothetical protein OsJ_03397 [Oryza sativa Japonica Group] |
GenBank | EEC71452.1 | 0 | 1 | 344 | 107 | 450 | hypothetical protein OsI_03677 [Oryza sativa Indica Group] |
RefSeq | NP_001044198.1 | 0 | 1 | 344 | 107 | 450 | Os01g0739700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002456331.1 | 0 | 1 | 344 | 111 | 454 | hypothetical protein SORBIDRAFT_03g034100 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 4 | 236 | 88 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 4 | 237 | 88 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 4 | 237 | 88 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 4 | 237 | 88 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 4 | 237 | 88 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL870821 | 265 | 55 | 319 | 0 |
EB663214 | 265 | 1 | 265 | 0 |
GT051468 | 275 | 68 | 342 | 0 |
DR946401 | 291 | 20 | 310 | 0 |
JG830892 | 238 | 30 | 267 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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