| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064468m |
| Family | CE8 |
| Protein Properties | Length: 418 Molecular Weight: 43858.1 Isoelectric Point: 6.8554 |
| Chromosome | Chromosome/Scaffold: 0225578 Start: 33 End: 1454 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 255 | 417 | 0 |
| DVVVAQDGSGRYRTVSEAVARAPSHSKRKYVIYVKRGVYHENVEVRKKKTNIVLVGEGMGETVISGSRSFSGGWTTFRSATFAVAGAGFVARDLTIRNTA GPAAHQAVALRVDSDRSAFFRVAVEGHQDTLYAHSLRQFYRDCRVAGTVDFVFGNGAAVLQRT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| GDGRAVFAGL SFESPGEAEA FEDALLRQAC FNVSSAGGRG EACVSRLDTA RGGAGSGSVP 60 VLRAALRGTL GEAVGAAGAV GALASLSNHA REEMAVRDCL ELLGYSVDEL GWALDAMAET 120 DDGLEEPDAS GARGAAAARN AEDDLHAWLS AALGNQDTCL ESFRGTDGRL LRRVEAAVAQ 180 LSQLVSNLLA MHKRLRSITP LLHHAPPRNN GTGGGGAGDP GSELPPWVMD IEGGGGDEEL 240 LLKRARAGAR SARVDVVVAQ DGSGRYRTVS EAVARAPSHS KRKYVIYVKR GVYHENVEVR 300 KKKTNIVLVG EGMGETVISG SRSFSGGWTT FRSATFAVAG AGFVARDLTI RNTAGPAAHQ 360 AVALRVDSDR SAFFRVAVEG HQDTLYAHSL RQFYRDCRVA GTVDFVFGNG AAVLQRTL 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 5.0e-73 | 95 | 415 | 321 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 7.0e-80 | 88 | 415 | 329 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-96 | 88 | 415 | 329 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 9.0e-100 | 255 | 415 | 161 | + Pectinesterase. | ||
| PLN02506 | PLN02506 | 2.0e-122 | 24 | 415 | 393 | + putative pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001042618.1 | 0 | 6 | 417 | 27 | 466 | Os01g0254300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130602.1 | 0 | 1 | 418 | 30 | 447 | hypothetical protein LOC100191701 [Zea mays] |
| RefSeq | XP_002330224.1 | 0 | 28 | 415 | 2 | 358 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002457581.1 | 0 | 2 | 418 | 31 | 449 | hypothetical protein SORBIDRAFT_03g009790 [Sorghum bicolor] |
| RefSeq | XP_002512462.1 | 0 | 23 | 416 | 32 | 392 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 255 | 415 | 8 | 168 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 255 | 416 | 4 | 165 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-20 | 256 | 416 | 7 | 187 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-20 | 256 | 416 | 7 | 187 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-20 | 256 | 416 | 7 | 187 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EE175938 | 217 | 1 | 210 | 0 |
| JG642271 | 268 | 147 | 414 | 0 |
| EE177764 | 214 | 1 | 207 | 0 |
| DV139320 | 248 | 142 | 389 | 0 |
| EE607719 | 162 | 254 | 415 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |