Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064503m |
Family | GH28 |
Protein Properties | Length: 525 Molecular Weight: 56167.8 Isoelectric Point: 7.3666 |
Chromosome | Chromosome/Scaffold: 011947 Start: 5128 End: 8896 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 150 | 476 | 0 |
AAACKVEASTVLIPSELEFVVGPISFSGPYCKPNILFQLDGTILAQTSARVWGSGLLQWLEFTKLTGIAIQGSGVINGRGQEWWTYSDPNDDDDDDAFRV ELDKMPQIKPTALRFYGSSNVTVTGITIVNSSQCHLKFDSCQGVMVHDLTISSPENSPNTDGIHLQNSREVNIHHTNMACGDDCVSIQTGCSDINIHNVN CGPGHGISIGGLGRYNTKACVSNVTVRDVNMFKTMNGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPIIIDQFYCDKTTCRNQTSAVAVSGVQYENIRGTF TIKPAHFACSDNSPCSDITLTGIQLKP |
Full Sequence |
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Protein Sequence Length: 525 Download |
MRLGLKGLTF LLLLVLLVLC SSICLCDARS GKHWRRSRAT STSMLRKGKP KSSSSHKQNG 60 KGIQNPYQPS PSTSPVSPSR SPVHGKGGQG PTMPTPGGGS GCTVPPPPLL QPPPPPSPPA 120 EQDTVFNVVD FGAKGDGVTD DTQAFEAAWA AACKVEASTV LIPSELEFVV GPISFSGPYC 180 KPNILFQLDG TILAQTSARV WGSGLLQWLE FTKLTGIAIQ GSGVINGRGQ EWWTYSDPND 240 DDDDDAFRVE LDKMPQIKPT ALRFYGSSNV TVTGITIVNS SQCHLKFDSC QGVMVHDLTI 300 SSPENSPNTD GIHLQNSREV NIHHTNMACG DDCVSIQTGC SDINIHNVNC GPGHGISIGG 360 LGRYNTKACV SNVTVRDVNM FKTMNGVRIK TWQGGSGLVQ GIRFSNIQVS EVQTPIIIDQ 420 FYCDKTTCRN QTSAVAVSGV QYENIRGTFT IKPAHFACSD NSPCSDITLT GIQLKPVIVP 480 QYHLYNPFCW QAFGVLYTPT VPPIACLQIG KPAGNSVLSD GDLC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 6.0e-65 | 123 | 475 | 357 | + polygalacturonase/glycoside hydrolase family protein |
PLN03010 | PLN03010 | 5.0e-66 | 126 | 474 | 354 | + polygalacturonase |
PLN02218 | PLN02218 | 4.0e-67 | 121 | 475 | 359 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 4.0e-76 | 158 | 474 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 2.0e-88 | 125 | 507 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT39158.1 | 0 | 1 | 524 | 1 | 571 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | ACF79104.1 | 0 | 20 | 524 | 19 | 496 | unknown [Zea mays] |
GenBank | EEC79746.1 | 0 | 1 | 524 | 1 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
GenBank | EEE64806.1 | 0 | 1 | 524 | 1 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
RefSeq | XP_002441571.1 | 0 | 20 | 524 | 17 | 537 | hypothetical protein SORBIDRAFT_09g029500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-28 | 202 | 425 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-19 | 217 | 474 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-19 | 217 | 474 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-19 | 217 | 474 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-19 | 217 | 474 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |