| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064750m |
| Family | GH35 |
| Protein Properties | Length: 664 Molecular Weight: 72147.1 Isoelectric Point: 7.5379 |
| Chromosome | Chromosome/Scaffold: 0119930 Start: 97 End: 3320 |
| Description | beta-galactosidase 15 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 3 | 177 | 0 |
| KMFAGQGGPIILAQIENEYGNIMGELNNNQSASQYIHWCADMANKQKIGVPWIMCQQNHHVPHNVINTCNGFYCHDWFPNRTGIPKIWTENWTGWFKAWD KPDFHRSAEDIAFAVARFFQKRGSVQNYYMYHGGTNFGRTSGGPYITTSYDYDAPLDEYGNIRQPKYGHLKDLHN | |||
| Full Sequence |
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| Protein Sequence Length: 664 Download |
| DAKMFAGQGG PIILAQIENE YGNIMGELNN NQSASQYIHW CADMANKQKI GVPWIMCQQN 60 HHVPHNVINT CNGFYCHDWF PNRTGIPKIW TENWTGWFKA WDKPDFHRSA EDIAFAVARF 120 FQKRGSVQNY YMYHGGTNFG RTSGGPYITT SYDYDAPLDE YGNIRQPKYG HLKDLHNLLR 180 SMEKILVHGE HNDTAYAKNV TVTKYTYGGS SVCFISNQLN DTDVNVTLGA THLVPAWSVS 240 ILPDCKTVAY NTAKIKTQTS VMVKKANTVE EEPGALRWSW MPENLRPFMT DDRGSFRKTQ 300 LLDQIAAATD QSDYLWYRTS LEHKGEGAYK LYVNTTGHEI YAFVNGKLVG QNHSANGAFV 360 FQLETPVKLQ SGKNYISLLS GTVGLKNYGP LFELMPAGIA GGPVKLVGTN GTDIDLTNSS 420 WSYKSGLAGE QRQIHLDKAG HKWRGHNSSG IPVNRPFTWY KTSFAAPAGD EAVVVDLLGL 480 NKGAAWVNGH SLGRYWPAYT AAEMGGCHVC DYRGEFKAEG GGVRCLTGCG EPSQRFYHVP 540 RAFLRAGEPN TLVLFEEAGG DPTRAAFRTV AVGAVCAAAA EVGDDVTLSC GGHGRVVAGV 600 DVASFGVTRG SCGGYEGGCE SKAALKAFTA ACVGRESCTV KHTGAFAGAG CESGALTVQV 660 TCS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01301 | Glyco_hydro_35 | 5.0e-76 | 2 | 179 | 190 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 2.0e-163 | 3 | 663 | 690 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABU49386.1 | 0 | 1 | 662 | 168 | 828 | beta-galactosidase 15 [Oryza sativa Indica Group] |
| GenBank | ACN27651.1 | 0 | 1 | 663 | 160 | 822 | unknown [Zea mays] |
| GenBank | EEC66744.1 | 0 | 1 | 662 | 164 | 824 | hypothetical protein OsI_33101 [Oryza sativa Indica Group] |
| RefSeq | NP_001043252.1 | 0 | 1 | 662 | 168 | 827 | Os01g0533400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002457961.1 | 0 | 1 | 662 | 165 | 830 | hypothetical protein SORBIDRAFT_03g023500 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.00000000000001 | 2 | 175 | 144 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.00000000001 | 9 | 163 | 145 | 314 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.00000000001 | 9 | 163 | 145 | 314 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8c_B | 0.00000000001 | 9 | 163 | 145 | 314 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL814923 | 246 | 324 | 569 | 0 |
| FL814922 | 236 | 266 | 501 | 0 |
| FL767698 | 264 | 307 | 569 | 0 |
| FL814923 | 15 | 315 | 329 | 1.1 |
| FL814923 | 10 | 305 | 314 | 1.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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