| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064836m |
| Family | GH10 |
| Protein Properties | Length: 396 Molecular Weight: 44092.9 Isoelectric Point: 4.9645 |
| Chromosome | Chromosome/Scaffold: 0120424 Start: 537 End: 2506 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 46 | 335 | 0 |
| VQLDNGFPLGSCINGEVIQNPAFVDFFTNHMDWAVFENELKWYWTEAQRGQLNYGDADRLLDFCDRTGKPARGHCIFWAVDDDVQQWVKDIGGDRDQLMA AVQARIQSLLTRYAGRFPHYDVNNEMLHGRFFRDRLGDDVAALMFREAAWLDPGAALFVNDFNVECGNDPNATPDKYIDLIRGLQRGGAQVGGIGLQGHV TNPVGEVICDALDRLSAATGLPVWITELDVGEPDEALRADDLEVVLREAYAHPAVQGVVLWGFMQGHMWRQDAALVNADGTVNDAGQRFI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 396 Download |
| MDLRIIATDR KARFRHLKDK TDKVRMRDVV LKLGLGGAPG ASVRVVQLDN GFPLGSCING 60 EVIQNPAFVD FFTNHMDWAV FENELKWYWT EAQRGQLNYG DADRLLDFCD RTGKPARGHC 120 IFWAVDDDVQ QWVKDIGGDR DQLMAAVQAR IQSLLTRYAG RFPHYDVNNE MLHGRFFRDR 180 LGDDVAALMF REAAWLDPGA ALFVNDFNVE CGNDPNATPD KYIDLIRGLQ RGGAQVGGIG 240 LQGHVTNPVG EVICDALDRL SAATGLPVWI TELDVGEPDE ALRADDLEVV LREAYAHPAV 300 QGVVLWGFMQ GHMWRQDAAL VNADGTVNDA GQRFIELRRE WTSDARGRLD GDGYFKFRGF 360 HGTYVAQVTT AAGKMLKAFT VDKGDAPLVL DMMDM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 7.0e-27 | 30 | 316 | 316 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-64 | 52 | 336 | 303 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-67 | 85 | 334 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD52808.1 | 0 | 1 | 392 | 1 | 390 | putative (1,4)-beta-xylan endohydrolase [Oryza sativa Japonica Group] |
| GenBank | EAY72426.1 | 0 | 1 | 392 | 166 | 555 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
| RefSeq | NP_001041947.1 | 0 | 1 | 392 | 166 | 555 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001055187.1 | 0 | 1 | 392 | 183 | 579 | Os05g0319900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002452141.1 | 0 | 1 | 392 | 53 | 443 | hypothetical protein SORBIDRAFT_04g020543 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 1e-30 | 40 | 314 | 25 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 1e-30 | 40 | 314 | 25 | 313 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 3e-29 | 82 | 328 | 46 | 289 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 3e-29 | 82 | 328 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 6e-29 | 82 | 328 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FL860597 | 241 | 105 | 345 | 0 |
| FL874412 | 265 | 35 | 299 | 0 |
| HO149443 | 230 | 41 | 270 | 0 |
| HO159988 | 228 | 41 | 268 | 0 |
| HO149710 | 245 | 28 | 268 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
