Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064841m |
Family | GH17 |
Protein Properties | Length: 250 Molecular Weight: 26151.8 Isoelectric Point: 7.1699 |
Chromosome | Chromosome/Scaffold: 0119020 Start: 2425 End: 3174 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 3 | 248 | 0 |
NLAACPSCAATWVQTNVKPYYPAVNILYIAVGNEVQGGATQSILPAMRNLQGALAAASLAGIKVSTCVRLDVVTNSFPPSSGVFAQPYMADIARFLATAG APLLANVYPYFAYKGSPGDISLNYALFLPGTTVTDAGNGLVYTNLFDAMVDAVVAALEKAGAANVRVVVSESGWPSAGGTAASVQNAQTYNQNLINHGAQ GTPKRPGALETLVFAMFNENQKPGEPTEQNFGLFYPNKFPVYPITF |
Full Sequence |
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Protein Sequence Length: 250 Download |
MGNLAACPSC AATWVQTNVK PYYPAVNILY IAVGNEVQGG ATQSILPAMR NLQGALAAAS 60 LAGIKVSTCV RLDVVTNSFP PSSGVFAQPY MADIARFLAT AGAPLLANVY PYFAYKGSPG 120 DISLNYALFL PGTTVTDAGN GLVYTNLFDA MVDAVVAALE KAGAANVRVV VSESGWPSAG 180 GTAASVQNAQ TYNQNLINHG AQGTPKRPGA LETLVFAMFN ENQKPGEPTE QNFGLFYPNK 240 FPVYPITFR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.005 | 169 | 240 | 78 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 2.0e-109 | 3 | 248 | 252 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL35900.1 | 0 | 14 | 248 | 100 | 334 | AF443600_1 endo-1,3-beta-glucanase [Oryza sativa] |
GenBank | EAY77183.1 | 0 | 14 | 248 | 100 | 334 | hypothetical protein OsI_05153 [Oryza sativa Indica Group] |
RefSeq | NP_001045372.1 | 0 | 14 | 248 | 100 | 334 | Os01g0944700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459077.1 | 0 | 1 | 248 | 89 | 336 | hypothetical protein SORBIDRAFT_03g045490 [Sorghum bicolor] |
RefSeq | XP_002459079.1 | 0 | 1 | 249 | 89 | 340 | hypothetical protein SORBIDRAFT_03g045510 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 1 | 248 | 59 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 1 | 248 | 59 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 3 | 248 | 61 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 1 | 248 | 59 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 1 | 248 | 59 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HX143290 | 240 | 11 | 250 | 0 |
HX129177 | 229 | 22 | 250 | 0 |
DR739897 | 233 | 14 | 246 | 0 |
HX182047 | 229 | 22 | 250 | 0 |
EG375484 | 232 | 19 | 250 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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