| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064991m |
| Family | GH51 |
| Protein Properties | Length: 672 Molecular Weight: 73515.6 Isoelectric Point: 4.6668 |
| Chromosome | Chromosome/Scaffold: 011587 Start: 4700 End: 10790 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 227 | 537 | 0 |
| IWFDQVSLMPSDTYMGHGFRKDLASMLANLKPRFLKFPGGNYVMGNYLVNAFRWSETVGPWEERPGHFNDAWAYWTDDGLGFFEFLQLAEDLGACPVWVV NDGASLNEEVPTATIAAFVKDVVNGIEFARGDPQTAWGSVRAAMGHPEPFQLYYVSIGNQECSKYYYKVNYMKFYSAIKASYPDITIISSCDRSAISPVN PADLYDVHVYTSSGDMFSRSRMFDNTARNGPKAIVSEYAVTGNDAGRGTLIAALAEAAFLIGLERNSDVVEMASCAPLFVNDNDRRWNPDAIVFNSWQHY GCPNYWMLHFF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 672 Download |
| MGVLKAGSLC WLFHVLVLVC ALCQILYVGS IGAQTAQLSV DASPQNAQVI PGNMFGIFFE 60 EINHAGAGGL WAELVSNRGF EAGGPNTPSN IDPWLTIGDE SNIIVATDRS SCFAGNPIAL 120 RMEVHCETSG TNACPSGGVG IYNPGYWGMN IERRKVYRAT MYIKSSDSVE LTVSLTSSDG 180 LQNLASHTIT GDKEDFVEWT KVEFDLESID RNTNSRLQLT TTKSGIIWFD QVSLMPSDTY 240 MGHGFRKDLA SMLANLKPRF LKFPGGNYVM GNYLVNAFRW SETVGPWEER PGHFNDAWAY 300 WTDDGLGFFE FLQLAEDLGA CPVWVVNDGA SLNEEVPTAT IAAFVKDVVN GIEFARGDPQ 360 TAWGSVRAAM GHPEPFQLYY VSIGNQECSK YYYKVNYMKF YSAIKASYPD ITIISSCDRS 420 AISPVNPADL YDVHVYTSSG DMFSRSRMFD NTARNGPKAI VSEYAVTGND AGRGTLIAAL 480 AEAAFLIGLE RNSDVVEMAS CAPLFVNDND RRWNPDAIVF NSWQHYGCPN YWMLHFFKDS 540 SGAALHPSTI QLSNYDQLVT SAITWNNSQD GNTYLKIKVV NFGSKAVNLN ISVTGLETDI 600 QKFGSIKTVL TSGWLRDENS FQQPDKVVPA ASPITNAGEQ MGVVLDSYSL TSFDILLGSS 660 QTLHSVSGSS L* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam06964 | Alpha-L-AF_C | 5.0e-26 | 462 | 649 | 205 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| COG3534 | AbfA | 9.0e-27 | 244 | 386 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| smart00813 | Alpha-L-AF_C | 1.0e-37 | 462 | 649 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 1 | 671 | 1 | 671 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAC10349.1 | 0 | 1 | 661 | 1 | 660 | putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I [Oryza sativa Japonica Group] |
| GenBank | EEC75141.1 | 0 | 1 | 671 | 1 | 675 | hypothetical protein OsI_11337 [Oryza sativa Indica Group] |
| GenBank | EEE58961.1 | 0 | 1 | 671 | 1 | 675 | hypothetical protein OsJ_10647 [Oryza sativa Japonica Group] |
| RefSeq | XP_002463418.1 | 0 | 1 | 661 | 1 | 662 | hypothetical protein SORBIDRAFT_02g043530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 5e-17 | 243 | 635 | 67 | 482 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3ug5_E | 5e-17 | 243 | 635 | 67 | 482 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3ug5_D | 5e-17 | 243 | 635 | 67 | 482 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3ug5_C | 5e-17 | 243 | 635 | 67 | 482 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3ug5_B | 5e-17 | 243 | 635 | 67 | 482 | A Chain A, Pectin Methylesterase From Carrot |
