Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00065133m |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 41737.2 Isoelectric Point: 8.3868 |
Chromosome | Chromosome/Scaffold: 0120094 Start: 857 End: 2327 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 8 | 336 | 0 |
TACSLDNAVFLVPAGRRYKVGAITFMGPCKAKMIIQIQGTIVAPEEPSEWDPRSPRLWLLFSGLAGARIQGGGVIDGSGSKWWANSCKINKSNPCKAAPT AVTIDSSRGVRVKGLRVQNAQQMHLTVYRSRNVRLAGVRIEAPEDSPNTDGIHVAESTAVTIQNCRIGTGDDCISIVNASFNIRMKNIDCGPGHGISIGS LGKDGTFAAVENVALDTARISRAQNGVRIKTWQGGAGYVRNVRFSNVAVDDVDHPIVIDQFYCDARAGPCRSSTSSGVQVANVAYLNISGTSRRAEAIRF ACSDAAPCTDIVLRDINLRRSGGDGGGGE |
Full Sequence |
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Protein Sequence Length: 396 Download |
AFSSAWKTAC SLDNAVFLVP AGRRYKVGAI TFMGPCKAKM IIQIQGTIVA PEEPSEWDPR 60 SPRLWLLFSG LAGARIQGGG VIDGSGSKWW ANSCKINKSN PCKAAPTAVT IDSSRGVRVK 120 GLRVQNAQQM HLTVYRSRNV RLAGVRIEAP EDSPNTDGIH VAESTAVTIQ NCRIGTGDDC 180 ISIVNASFNI RMKNIDCGPG HGISIGSLGK DGTFAAVENV ALDTARISRA QNGVRIKTWQ 240 GGAGYVRNVR FSNVAVDDVD HPIVIDQFYC DARAGPCRSS TSSGVQVANV AYLNISGTSR 300 RAEAIRFACS DAAPCTDIVL RDINLRRSGG DGGGGEVQTV CNCAIGFDYG RVSPAADCLR 360 SSTCGGAPDH RPDDDDGKGK AVAGTMPAPI LHTEL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 6.0e-77 | 1 | 363 | 367 | + polygalacturonase |
PLN03003 | PLN03003 | 2.0e-85 | 1 | 325 | 327 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 8.0e-98 | 15 | 325 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 1.0e-105 | 1 | 326 | 329 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 5.0e-126 | 1 | 363 | 364 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD07736.1 | 0 | 1 | 366 | 99 | 459 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EEC72414.1 | 0 | 1 | 366 | 99 | 459 | hypothetical protein OsI_05716 [Oryza sativa Indica Group] |
RefSeq | NP_001045783.1 | 0 | 1 | 366 | 126 | 486 | Os02g0130200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_173760.2 | 0 | 1 | 361 | 85 | 438 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002453250.1 | 0 | 1 | 395 | 122 | 520 | hypothetical protein SORBIDRAFT_04g002530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-25 | 79 | 330 | 77 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-25 | 79 | 330 | 77 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-25 | 79 | 330 | 77 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-25 | 79 | 330 | 77 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-25 | 79 | 330 | 77 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE647334 | 234 | 87 | 320 | 0 |
FL753658 | 180 | 217 | 396 | 0 |
CB881820 | 201 | 77 | 277 | 0 |
FP038137 | 219 | 56 | 274 | 0 |
EY181291 | 254 | 15 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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