Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00065138m |
Family | GT47 |
Protein Properties | Length: 524 Molecular Weight: 58986 Isoelectric Point: 8.3375 |
Chromosome | Chromosome/Scaffold: 012066 Start: 5525 End: 8616 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 188 | 474 | 0 |
RLLKVFIYHDGAKPIFHSPELKGIYASEGWFMKLMEANQNFVVRDPNRAHLFYLPYSSRQLEHNLYVPGSNTMEPLSIFIKNYIDMISAKYPYWNRTKGA DHFIVACHDWGPYTTKLHDELRKNTIKALCNADLSEGIFIRGKDVSLPETFLRAPRRPLRDIGGRPVAQRTILAFFAGQMHGRVRPVLLKYWGDKDADMR IYSRLPHRITRRRNYVQHMKSSKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPFDDALNWSAFSVVVPERDVPKLKDILLAI |
Full Sequence |
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Protein Sequence Length: 524 Download |
MPHHATPPHP PAVRKILSRP RVVAACAAVA ALALLLSAAP AAEDPSRWHS YLVGPLPGGT 60 REETVVAAAV AGSFAVAAAA AASPSPTGAP LSSLGETNLS GEIEPTPAPS MFLVPSPSPA 120 ENFDDGSMEE PERPEIKAPL WSTAADEELI YAKKDITNAP LTLDDPDLYA PLFRNVSMFK 180 RSYELMERLL KVFIYHDGAK PIFHSPELKG IYASEGWFMK LMEANQNFVV RDPNRAHLFY 240 LPYSSRQLEH NLYVPGSNTM EPLSIFIKNY IDMISAKYPY WNRTKGADHF IVACHDWGPY 300 TTKLHDELRK NTIKALCNAD LSEGIFIRGK DVSLPETFLR APRRPLRDIG GRPVAQRTIL 360 AFFAGQMHGR VRPVLLKYWG DKDADMRIYS RLPHRITRRR NYVQHMKSSK YCICPMGYEV 420 NSPRIVEAIY YECVPVIIAD NFVLPFDDAL NWSAFSVVVP ERDVPKLKDI LLAIPESQYI 480 TLQSNVKRVQ KHFLWHPNPI KYDIFHMILH SVWFSRVNQM QID* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-67 | 186 | 474 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23466.1 | 0 | 140 | 522 | 153 | 535 | unnamed protein product [Vitis vinifera] |
GenBank | EEC69788.1 | 0 | 40 | 523 | 37 | 536 | hypothetical protein OsI_00072 [Oryza sativa Indica Group] |
RefSeq | NP_001041784.1 | 0 | 40 | 523 | 37 | 550 | Os01g0107700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002269459.1 | 0 | 140 | 523 | 153 | 536 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002457517.1 | 0 | 3 | 521 | 5 | 521 | hypothetical protein SORBIDRAFT_03g008610 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT051299 | 334 | 177 | 509 | 0 |
BX834842 | 336 | 187 | 521 | 0 |
HO277525 | 219 | 298 | 516 | 0 |
CA255760 | 216 | 298 | 513 | 0 |
ES808098 | 339 | 155 | 493 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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