Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00065339m |
Family | PL1 |
Protein Properties | Length: 274 Molecular Weight: 30251.4 Isoelectric Point: 8.2511 |
Chromosome | Chromosome/Scaffold: 0121281 Start: 2101 End: 3296 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 4 | 193 | 0 |
ELSQELLVSSDKTIDGRGAQVRIANGGGITVQFARNVIIHNLHVHDVKHTMGGMMRDSPTHTGPRTKADGDGISLFGATNVWIDHISMSNCEDGLVDVVQ SSTGVTISNCHFTNHNDVMLFGASDSYPQDQVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNAPTIISQGNRYIA |
Full Sequence |
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Protein Sequence Length: 274 Download |
MIIELSQELL VSSDKTIDGR GAQVRIANGG GITVQFARNV IIHNLHVHDV KHTMGGMMRD 60 SPTHTGPRTK ADGDGISLFG ATNVWIDHIS MSNCEDGLVD VVQSSTGVTI SNCHFTNHND 120 VMLFGASDSY PQDQVMQITV AFNHFGRGLV QRMPRCRWGF FHVVNNDYTH WLMYAIGGSN 180 APTIISQGNR YIAPPNMAAK VITKHYADEG VWKNWVWHTE NDLFMNGAVF QPSGGAVPRK 240 VKKDEWVKPK PGSYVTRLTR NSGTLECRPG MPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-33 | 8 | 189 | 194 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-69 | 7 | 191 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-75 | 1 | 195 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 1 | 273 | 173 | 444 | unknown [Zea mays] |
GenBank | EAY85003.1 | 0 | 1 | 273 | 166 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
GenBank | EEE56553.1 | 0 | 14 | 273 | 150 | 410 | hypothetical protein OsJ_05879 [Oryza sativa Japonica Group] |
RefSeq | NP_001046281.1 | 0 | 1 | 273 | 173 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002453531.1 | 0 | 1 | 273 | 173 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 265 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 265 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-25 | 1 | 241 | 56 | 265 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 9 | 205 | 128 | 348 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000003 | 7 | 191 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV550851 | 232 | 1 | 232 | 0 |
AW399882 | 198 | 1 | 198 | 0 |
BQ528461 | 197 | 60 | 256 | 0 |
BE129976 | 194 | 53 | 246 | 0 |
GT824254 | 236 | 22 | 256 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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