Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00065909m |
Family | CE8 |
Protein Properties | Length: 559 Molecular Weight: 58464.9 Isoelectric Point: 9.2216 |
Chromosome | Chromosome/Scaffold: 011718 Start: 2286 End: 4103 |
Description | root hair specific 12 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 242 | 512 | 0 |
AVVALDGSGTHRSINDAVADVTAARSRASGGHGEGASRRVVLHVKAGRYVETVRVPNANVMLVGDGKGKTILDGRKSAGDGYTTYNSATVVVLGVGFVGK GLSIINSAGPGKGQAVALVVSGDRSALYQCEIQAYQDTLYAHANRQFYAQTDVSGTVDFIFGNAAVVFQNCGIRARKPITGQRDTITAQGRYDLNQNTGI TLQKCQIAGAPDLGSMPVYLGRPWRKFARVGVMESDLDGSIAAAGWLEWSDPSALSTLFYGEFPNTGPVQR |
Full Sequence |
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Protein Sequence Length: 559 Download |
METFARANSR EWQGRRRLLP VAAWSCAMAM VLALAAVAAA TSTTKGENEA TSTGIVVGAV 60 SRIATSAAAP QTRQSVTLIC QSTPYPSACE TALSSAEARS AGNPFAASVQ FAIARATAAR 120 ALARNLSAST PAEPPSGMRD CVDLLDITLH QLRDALAGSA SDSEGTRTWL SAAMTYQDTC 180 NESLAVAAVP ASAGRDAVRR QVGALAQFIG TALALHVSRM EGQSGTALRL LESPAANLTP 240 DAVVALDGSG THRSINDAVA DVTAARSRAS GGHGEGASRR VVLHVKAGRY VETVRVPNAN 300 VMLVGDGKGK TILDGRKSAG DGYTTYNSAT VVVLGVGFVG KGLSIINSAG PGKGQAVALV 360 VSGDRSALYQ CEIQAYQDTL YAHANRQFYA QTDVSGTVDF IFGNAAVVFQ NCGIRARKPI 420 TGQRDTITAQ GRYDLNQNTG ITLQKCQIAG APDLGSMPVY LGRPWRKFAR VGVMESDLDG 480 SIAAAGWLEW SDPSALSTLF YGEFPNTGPV QRRTAGWRGM ACTRPCPSRR PRSSPSRSLS 540 RGTWLGDIEV PYASGLFE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 1.0e-101 | 50 | 519 | 523 | + pectinesterase | ||
PLN02301 | PLN02301 | 9.0e-103 | 136 | 509 | 399 | + pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 8.0e-108 | 54 | 556 | 542 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02170 | PLN02170 | 4.0e-113 | 81 | 509 | 453 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 6.0e-125 | 241 | 509 | 275 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19539.1 | 0 | 11 | 556 | 2 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
RefSeq | NP_001048322.1 | 0 | 6 | 556 | 7 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148248.1 | 0 | 59 | 556 | 58 | 578 | pectinesterase-2 [Zea mays] |
RefSeq | XP_002449226.1 | 0 | 28 | 509 | 1 | 536 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
RefSeq | XP_002454668.1 | 0 | 1 | 508 | 1 | 526 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 240 | 556 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 238 | 558 | 1 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-16 | 239 | 466 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-16 | 239 | 466 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-16 | 239 | 466 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |