Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066185m |
Family | CBM49 |
Protein Properties | Length: 442 Molecular Weight: 48560.6 Isoelectric Point: 9.5793 |
Chromosome | Chromosome/Scaffold: 012228 Start: 27 End: 1653 |
Description | glycosyl hydrolase 9C2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM49 | 348 | 426 | 1.6e-31 |
IEIEQNVTRTLATRRATTYRRYSVTVTNRSRKTVRELHLGVSELRGRLWGLDKARYGYVPPRWLPALRAGESLRFVYVQ | |||
GH9 | 1 | 303 | 0 |
MAAASLVFRGTYPGYANLLLEHSKQLFAFADKYRGKYDASITVARNYYGSFSGYGDELLWATEEGCYLEYLARNGDALGGTGWSINQFGWDVKYPGVQVL AAKFLLQGRAGAHAATLQRYRQNAEFFVCSCVGKGAVNVPRTPGGMMYHQRWNNLQFVTSASFLLTVYSDYATRLPGSGGGVRCPGGAARPYEILAFVRS QVNYILGDNPRGTSYMVGYGGSFPRQVHHRGASIVSVRKDPSFVSCQEGYSSWYPRPAGNPNVLEGAVVGGPDEYDDFADERNNYEQTEAATYNSAPLLG VLA |
Full Sequence |
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Protein Sequence Length: 442 Download |
MAAASLVFRG TYPGYANLLL EHSKQLFAFA DKYRGKYDAS ITVARNYYGS FSGYGDELLW 60 ATEEGCYLEY LARNGDALGG TGWSINQFGW DVKYPGVQVL AAKFLLQGRA GAHAATLQRY 120 RQNAEFFVCS CVGKGAVNVP RTPGGMMYHQ RWNNLQFVTS ASFLLTVYSD YATRLPGSGG 180 GVRCPGGAAR PYEILAFVRS QVNYILGDNP RGTSYMVGYG GSFPRQVHHR GASIVSVRKD 240 PSFVSCQEGY SSWYPRPAGN PNVLEGAVVG GPDEYDDFAD ERNNYEQTEA ATYNSAPLLG 300 VLARLAGACG TGLEEYQLPP PAAGENQTTS SSPPRRRRPH HGPPPSPIEI EQNVTRTLAT 360 RRATTYRRYS VTVTNRSRKT VRELHLGVSE LRGRLWGLDK ARYGYVPPRW LPALRAGESL 420 RFVYVQPGAP ANVWVTGYKL V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00759 | Glyco_hydro_9 | 2.0e-94 | 1 | 303 | 312 | + Glycosyl hydrolase family 9. | ||
PLN00119 | PLN00119 | 9.0e-109 | 1 | 306 | 313 | + endoglucanase | ||
PLN02420 | PLN02420 | 1.0e-120 | 1 | 319 | 328 | + endoglucanase | ||
PLN02340 | PLN02340 | 1.0e-129 | 1 | 439 | 449 | + endoglucanase | ||
PLN02171 | PLN02171 | 0 | 1 | 441 | 450 | + endoglucanase |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005576 | extracellular region |
GO:0005975 | carbohydrate metabolic process |
GO:0030246 | carbohydrate binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN25631.1 | 0 | 5 | 441 | 187 | 623 | unknown [Zea mays] |
GenBank | ACN27322.1 | 0 | 5 | 441 | 125 | 561 | unknown [Zea mays] |
GenBank | EAY96964.1 | 0 | 5 | 441 | 188 | 626 | hypothetical protein OsI_18884 [Oryza sativa Indica Group] |
RefSeq | NP_001054920.1 | 0 | 5 | 441 | 193 | 629 | Os05g0212300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440792.1 | 0 | 5 | 441 | 187 | 627 | hypothetical protein SORBIDRAFT_09g006670 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ksd_A | 2e-36 | 5 | 305 | 163 | 428 | A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome Inactivating Protein With 7-Methylguanine At 2.65 A Resolution |
PDB | 1ksc_A | 2e-36 | 5 | 305 | 163 | 428 | A Chain A, Crystal Structure Of The Complex Of Type 1 Ribosome Inactivating Protein With 7-Methylguanine At 2.65 A Resolution |
PDB | 1ks8_A | 2e-36 | 5 | 305 | 163 | 428 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 4tf4_B | 1e-31 | 4 | 320 | 163 | 454 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
PDB | 4tf4_A | 1e-31 | 4 | 320 | 163 | 454 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX680399 | 282 | 9 | 283 | 0 |
GT742042 | 304 | 5 | 301 | 0 |
ES907037 | 294 | 37 | 323 | 0 |
CO072186 | 271 | 47 | 310 | 0 |
FG829580 | 270 | 25 | 287 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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