| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00066351m |
| Family | CBM43 |
| Protein Properties | Length: 479 Molecular Weight: 51373.6 Isoelectric Point: 8.5554 |
| Chromosome | Chromosome/Scaffold: 012246 Start: 4210 End: 5930 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 389 | 471 | 1.5e-26 |
| WCVMSPAASKKLNETAVGNALSYACGQGNGTCDAIQPGKKCYLPNTTVAHASYAFNSYWQQFRRTGATCYFNNLAEQTIKDPI | |||
| GH17 | 38 | 362 | 0 |
| LGVNYGRVADDIPSPRRSVELLRAAGAGSVKIYDANPGVLRALAGTRWPVSIMVPNEIIPDIAASPAAADRWVADNLVPYYPATRVKFLLVGNEILSDYS IANSTWARLVPAMENIHLSLRKRGISSVKIGTTLAMDALADGAFPRPPSAAAFRPDIAGSVVRPLLHFLNGTNSYYFVDAYPYFVWAGNNLTVPLDYALF QGGRTRYVDPGTGLTYTNLLDEMLDAVAIAMAKLGYGGVKLAVAETGWPNGCDYDQIGGNVHNAAIYNRNLAARMAKNPGTPLRPGAKMPVFVFSLYNED LKGGPGTERHWGLYYANGTAVYEVD | |||
| Full Sequence |
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| Protein Sequence Length: 479 Download |
| MAAAQPPRAL PLLLLLLCAA FSFHVEAAHG ASGGAHGLGV NYGRVADDIP SPRRSVELLR 60 AAGAGSVKIY DANPGVLRAL AGTRWPVSIM VPNEIIPDIA ASPAAADRWV ADNLVPYYPA 120 TRVKFLLVGN EILSDYSIAN STWARLVPAM ENIHLSLRKR GISSVKIGTT LAMDALADGA 180 FPRPPSAAAF RPDIAGSVVR PLLHFLNGTN SYYFVDAYPY FVWAGNNLTV PLDYALFQGG 240 RTRYVDPGTG LTYTNLLDEM LDAVAIAMAK LGYGGVKLAV AETGWPNGCD YDQIGGNVHN 300 AAIYNRNLAA RMAKNPGTPL RPGAKMPVFV FSLYNEDLKG GPGTERHWGL YYANGTAVYE 360 VDLTGRRPLC SYPPLPAPEN NTPYKGPIWC VMSPAASKKL NETAVGNALS YACGQGNGTC 420 DAIQPGKKCY LPNTTVAHAS YAFNSYWQQF RRTGATCYFN NLAEQTIKDP ISICNSFN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0003 | 274 | 354 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 7.0e-18 | 389 | 463 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-30 | 389 | 470 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-82 | 38 | 362 | 326 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28576.1 | 0 | 150 | 470 | 1 | 321 | unknown [Zea mays] |
| GenBank | EEC84834.1 | 0 | 14 | 470 | 7 | 465 | hypothetical protein OsI_31928 [Oryza sativa Indica Group] |
| RefSeq | NP_001063586.1 | 0 | 12 | 470 | 7 | 468 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149815.1 | 0 | 18 | 470 | 16 | 465 | glucan endo-1,3-beta-glucosidase A6 [Zea mays] |
| RefSeq | XP_002462618.1 | 0 | 38 | 470 | 37 | 469 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 38 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_B | 0 | 38 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 38 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_B | 0 | 38 | 364 | 3 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_A | 0 | 38 | 364 | 3 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
