Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066354m |
Family | GH3 |
Protein Properties | Length: 485 Molecular Weight: 51423.4 Isoelectric Point: 7.5147 |
Chromosome | Chromosome/Scaffold: 0120998 Start: 3 End: 1592 |
Description | beta-xylosidase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 10 | 182 | 0 |
SFWSPNVNIFRDPRWGRGQETPGEDPAVSSRYAAAYVRGLQQQHPRSGGLKLAACCKHFTAYDLDRWGGTDRFHFNAVVAPQDLEDTFNVPFRACVADGA AAAVMCSYNQVNGVPTCADRAFLRGTIRAQWGLDGYIVSDCDSVDVFFRDQHYTRTTEDAVAATLRAGLDLDC |
Full Sequence |
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Protein Sequence Length: 485 Download |
MYNGGAAGLS FWSPNVNIFR DPRWGRGQET PGEDPAVSSR YAAAYVRGLQ QQHPRSGGLK 60 LAACCKHFTA YDLDRWGGTD RFHFNAVVAP QDLEDTFNVP FRACVADGAA AAVMCSYNQV 120 NGVPTCADRA FLRGTIRAQW GLDGYIVSDC DSVDVFFRDQ HYTRTTEDAV AATLRAGLDL 180 DCGPFLAQYT EPALASGKVS DADVDAALLN TVAVQMRLGM FDGDPAAGPF GHLGPHDVCT 240 PAHQELALEA ARQSVVLLKN GRGKHRAGVL PLRPATHRAV AVVGPHAEAT VAMIGNYAGK 300 PCRYTTPLQG IAGYVKQAVH QAGCADVACA GGQQPIAAAV DAARRADATI VVAGLDQKVE 360 AEGLDRSSLL LPGRQAELIS AVARASKGPV VLVLMSGGPI DIAFALNDPR VAAILWAGYP 420 GQAGGQAIAD VIFGHHNPGG KLPMTWYPQD YLQKAPMTNM AMRANPKTGY PGRTYRFYTG 480 PTILP |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 3.0e-44 | 12 | 322 | 316 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 6.0e-46 | 12 | 207 | 199 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-47 | 255 | 458 | 210 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 2.0e-60 | 2 | 445 | 478 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 1 | 483 | 490 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95273.1 | 0 | 1 | 485 | 236 | 716 | Beta-D-xylosidase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG29242.1 | 0 | 1 | 485 | 1 | 490 | auxin-induced beta-glucosidase [Zea mays] |
GenBank | EAY81823.1 | 0 | 1 | 485 | 236 | 716 | hypothetical protein OsI_36995 [Oryza sativa Indica Group] |
RefSeq | NP_001145980.1 | 0 | 1 | 485 | 140 | 629 | hypothetical protein LOC100279508 [Zea mays] |
RefSeq | XP_002451244.1 | 0 | 1 | 483 | 147 | 620 | hypothetical protein SORBIDRAFT_05g026400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 12 | 446 | 128 | 569 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
PDB | 3u48_A | 0 | 12 | 446 | 128 | 569 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
PDB | 3u4a_B | 0 | 12 | 446 | 128 | 569 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
PDB | 3u4a_A | 0 | 12 | 446 | 128 | 569 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
PDB | 1x39_A | 1e-30 | 6 | 458 | 137 | 581 | A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL905868 | 232 | 57 | 288 | 0 |
EE180613 | 245 | 1 | 240 | 0 |
EE292970 | 243 | 1 | 238 | 0 |
FL863713 | 246 | 1 | 245 | 0 |
DR966318 | 237 | 1 | 232 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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