Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066390m |
Family | GH10 |
Protein Properties | Length: 580 Molecular Weight: 63065.2 Isoelectric Point: 5.9443 |
Chromosome | Chromosome/Scaffold: 011804 Start: 7700 End: 10813 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 230 | 492 | 0 |
RTNFPLGAAMSQHILTNSAYQTWFASRFAVATFENEMKWYSTEPAAGREDYTVPDAMMAFAKSNGIAVRGHNVFWDQPSQQPPWVQSLPYPQLLAAASRR IRSVVSRYAGQVIGWDVVNENLHFNFYEGRFGWDASTAFYAAARLLDAGSALMFMNEFNTLEQPGDMAALPARYLQRLRQITAAYPENGAGMAIGLEGHF TNPNIPYMRAALDTLAQAGIPIWLTEVDVAAGPAQAQHLEEVLREAYAHPAVQGIVLWGAWRP |
Full Sequence |
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Protein Sequence Length: 580 Download |
MRKVAGGLMV AELAFWLPWI ALLQSCMVRA LPYDYSASIE CLPEPLEPQY GGGILRNADF 60 SAGLRGWSTF GYGSIAESKS AAGNGFAVAL NRTRPYQSVS QKVYLQRDTH YTLSAWLQVG 120 DGSADVRAVV KTVGDFVHAG GVVAKCGCWS MLKGGLTAAS SGPAEIYFES NATVDLWVDS 180 VSLNPFTRDE WAAHRAASVS AARKKTVRLQ ATDSAGNPLA GAAVSLDAVR TNFPLGAAMS 240 QHILTNSAYQ TWFASRFAVA TFENEMKWYS TEPAAGREDY TVPDAMMAFA KSNGIAVRGH 300 NVFWDQPSQQ PPWVQSLPYP QLLAAASRRI RSVVSRYAGQ VIGWDVVNEN LHFNFYEGRF 360 GWDASTAFYA AARLLDAGSA LMFMNEFNTL EQPGDMAALP ARYLQRLRQI TAAYPENGAG 420 MAIGLEGHFT NPNIPYMRAA LDTLAQAGIP IWLTEVDVAA GPAQAQHLEE VLREAYAHPA 480 VQGIVLWGAW RPEGCYVMCL TDNNFNNLPQ GDVVDRLIAE WRSTPRAGAT DAQGFFEAEL 540 VHGEYKVSVS HPALNNSVTR SVKVDLGSGS EHYFIDMQV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02472 | murD | 0.005 | 369 | 459 | 99 | + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | ||
pfam02018 | CBM_4_9 | 1.0e-5 | 52 | 170 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 5.0e-27 | 214 | 488 | 299 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-43 | 225 | 506 | 311 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 6.0e-65 | 266 | 514 | 275 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94504.1 | 0 | 10 | 577 | 1 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG36704.1 | 0 | 8 | 579 | 1 | 576 | 1,4-beta-xylanase [Zea mays] |
GenBank | ACL53134.1 | 0 | 41 | 579 | 16 | 555 | unknown [Zea mays] |
RefSeq | NP_001130600.1 | 0 | 8 | 579 | 20 | 595 | hypothetical protein LOC100191699 [Zea mays] |
RefSeq | XP_002468320.1 | 0 | 1 | 579 | 1 | 573 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 2e-28 | 235 | 514 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1tux_A | 2e-24 | 222 | 518 | 2 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1v0n_A | 2e-23 | 235 | 493 | 16 | 277 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1v0m_A | 2e-23 | 235 | 493 | 16 | 277 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1v0l_A | 2e-23 | 235 | 493 | 16 | 277 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |