y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066510m |
Family | CE8 |
Protein Properties | Length: 567 Molecular Weight: 61656.6 Isoelectric Point: 6.7807 |
Chromosome | Chromosome/Scaffold: 020270 Start: 5537 End: 7525 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 264 | 552 | 0 |
NVTVAKDGSGDFRNISAALDAMPGNYTGRYLIYVKEGVYEEMVNITNCMANVTMYGDGSSKSIVTGSRNILDGTRMWRTATFAVDGDSFTAMSLGIRNTA GVEKQQALALRVKGDKAIFFNCRIEGNQDTLFAQAYRQFYRSCVISGTVDFIMGDAAAVFQRCVILVRQPRKGQPAVVTAHARRDHQQTTGFVIHRSQIV ADEQLQASTKVYLGRPWKEFARAVVMESDIQGFVHGEGYMPWEGKENLGTAFFGEFGNAGAGANITGRKGMQGFHEMNKDRALQFTVGT |
Full Sequence |
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Protein Sequence Length: 567 Download |
MPSSDDGDPS RRRLVVGVLS ALMLVAMVVG TVAFFLNEKA EDEEVSKRNM SKTMRSVELF 60 CAPADYQGTC RETLEGALSR SDPSEHPHTA ATAAIAAVER ALEQGFNRSS VLDAVRQSND 120 TLVWEAMRDC RMLLGSCRDN VERALASIAW RGVDGPVQDL QAWLSAVITF QGSCVDMFPK 180 GEVRDEVQTT MEKAREISSN ALAVIKQGAA LASMLDLHAG EDLNGKTRGG RRQQLEEGEQ 240 PAWVSREDRE LLAGGGGKGG LTPNVTVAKD GSGDFRNISA ALDAMPGNYT GRYLIYVKEG 300 VYEEMVNITN CMANVTMYGD GSSKSIVTGS RNILDGTRMW RTATFAVDGD SFTAMSLGIR 360 NTAGVEKQQA LALRVKGDKA IFFNCRIEGN QDTLFAQAYR QFYRSCVISG TVDFIMGDAA 420 AVFQRCVILV RQPRKGQPAV VTAHARRDHQ QTTGFVIHRS QIVADEQLQA STKVYLGRPW 480 KEFARAVVME SDIQGFVHGE GYMPWEGKEN LGTAFFGEFG NAGAGANITG RKGMQGFHEM 540 NKDRALQFTV GTSCTAPSGY RTAAHR* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 4.0e-107 | 56 | 550 | 497 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 1.0e-109 | 115 | 552 | 453 | + pectinesterase | ||
PLN02990 | PLN02990 | 6.0e-111 | 37 | 549 | 525 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-133 | 264 | 551 | 292 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 4.0e-163 | 37 | 552 | 525 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY90351.1 | 0 | 41 | 551 | 41 | 580 | hypothetical protein OsI_11933 [Oryza sativa Indica Group] |
RefSeq | NP_001050306.1 | 0 | 41 | 551 | 41 | 580 | Os03g0399000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002273499.1 | 0 | 47 | 551 | 72 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324181.1 | 0 | 46 | 549 | 68 | 571 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002467727.1 | 0 | 1 | 551 | 1 | 571 | hypothetical protein SORBIDRAFT_01g033140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 263 | 552 | 7 | 300 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 261 | 550 | 1 | 294 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-21 | 262 | 529 | 3 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-21 | 262 | 529 | 3 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-21 | 262 | 529 | 3 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |