| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00066561m |
| Family | PL4 |
| Protein Properties | Length: 620 Molecular Weight: 68781.2 Isoelectric Point: 5.4179 |
| Chromosome | Chromosome/Scaffold: 020232 Start: 14 End: 3540 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 22 | 618 | 0 |
| GVRLHVGQRQVVVDNGVVQVAMSVPEGRITRVGYGGEPNNLLEYDAGQGDSGGYWDSVWNYPDSDLPGQYNTLDSTEFNVVSSSEDQVELSFRSTYNPSL QNSFQLNIDKRGSSGFYCYAIFEHARDHPAMNITEARLVFKLNMGKFNYMAITDDIQRYMPSAIDRDEPRAVPLAYKEAVLLVDPKEPQFRGEVDDKYQY SLDNKDNVVHGWISGGELNPMGFWVITPSNEFKSGGPFKRELTSHVGPTSLTMFFGTHYIGKYMVAKIADGESWKKVLGPVFIYLNSSPKSGNNLQALWE DTKAQAQGEARNWPYSFLASPDFPKAAERGSIAGRLLVRDRYVSKKDMPAAMAYIGLAVPGQPGSWATESKGYQFWTRAASDGAFSIDNVREGVYDLYAF VPGILGDYSYSSPLTIAPGRVMSVGDLVFEPLRSGPTLWEIGVPDRAAAEFYIPDPDPKYINRLFVNKDRYRQYGLWERYAALYPEKDLIFTVGRSDESK DWFFAQVTRKVGQDSVPTTGQIRFNLDRVMAGGTYTLRIALAASETCRLQVQVNGGARRDGSGVFTTPEMGDDNAVARHGIHGLQWSLEFAIGGHLL | |||
| Full Sequence |
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| Protein Sequence Length: 620 Download |
| MAAVTPRLAA QASPEEAAGA RGVRLHVGQR QVVVDNGVVQ VAMSVPEGRI TRVGYGGEPN 60 NLLEYDAGQG DSGGYWDSVW NYPDSDLPGQ YNTLDSTEFN VVSSSEDQVE LSFRSTYNPS 120 LQNSFQLNID KRGSSGFYCY AIFEHARDHP AMNITEARLV FKLNMGKFNY MAITDDIQRY 180 MPSAIDRDEP RAVPLAYKEA VLLVDPKEPQ FRGEVDDKYQ YSLDNKDNVV HGWISGGELN 240 PMGFWVITPS NEFKSGGPFK RELTSHVGPT SLTMFFGTHY IGKYMVAKIA DGESWKKVLG 300 PVFIYLNSSP KSGNNLQALW EDTKAQAQGE ARNWPYSFLA SPDFPKAAER GSIAGRLLVR 360 DRYVSKKDMP AAMAYIGLAV PGQPGSWATE SKGYQFWTRA ASDGAFSIDN VREGVYDLYA 420 FVPGILGDYS YSSPLTIAPG RVMSVGDLVF EPLRSGPTLW EIGVPDRAAA EFYIPDPDPK 480 YINRLFVNKD RYRQYGLWER YAALYPEKDL IFTVGRSDES KDWFFAQVTR KVGQDSVPTT 540 GQIRFNLDRV MAGGTYTLRI ALAASETCRL QVQVNGGARR DGSGVFTTPE MGDDNAVARH 600 GIHGLQWSLE FAIGGHLLLQ 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09284 | RhgB_N | 0.004 | 213 | 323 | 113 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
| cd10316 | RGL4_M | 2.0e-27 | 349 | 448 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-36 | 460 | 619 | 161 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 9.0e-58 | 44 | 309 | 270 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-66 | 44 | 215 | 177 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 4 | 620 | 29 | 658 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 4 | 620 | 29 | 658 | Os12g0131900 [Oryza sativa Japonica Group] |
| GenBank | EEC68814.1 | 0 | 4 | 620 | 29 | 615 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
| RefSeq | NP_001066077.1 | 0 | 4 | 620 | 29 | 645 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002450784.1 | 0 | 21 | 618 | 38 | 625 | hypothetical protein SORBIDRAFT_05g018090 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC881475 | 278 | 99 | 359 | 0 |
| EE184030 | 264 | 113 | 359 | 0 |
| EE186325 | 262 | 115 | 359 | 0 |
| EE042619 | 262 | 115 | 359 | 0 |
| EE176009 | 262 | 115 | 359 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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