Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066756m |
Family | GH10 |
Protein Properties | Length: 422 Molecular Weight: 47274.9 Isoelectric Point: 6.3246 |
Chromosome | Chromosome/Scaffold: 0202941 Start: 1 End: 1350 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 89 | 334 | 0 |
GFPFGNAITKEILDLPAYEKWFSARFTVATFENEMKWYSTEWSQNQEDYRVPDAMLKLMQKYGIKVRGHNVFWDDQNSQMKWVTPMNLAQLKAAMQKRLK SVVSRYAGKVIHWDVVNENLHFSFFENKLGPTASAQIFQQVGQIDHSAILFMNEFNTLEQPGDPTRYPGNGGLKLGVGLESHFATPNLPYMRSALDTLAK LKMPMWLTEVDVVKSPNQVKFLEQVLREGFSHPNVDGIVMWAAWHA |
Full Sequence |
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Protein Sequence Length: 422 Download |
KDPNGERVVA GSIIAQSSCW SMLKGGMTAY SSGHGEIYFE SDAPVDIWVD SVSLQPFTFD 60 ERTIRLVAKG ADDKPMAHAN VSIDLLRLGF PFGNAITKEI LDLPAYEKWF SARFTVATFE 120 NEMKWYSTEW SQNQEDYRVP DAMLKLMQKY GIKVRGHNVF WDDQNSQMKW VTPMNLAQLK 180 AAMQKRLKSV VSRYAGKVIH WDVVNENLHF SFFENKLGPT ASAQIFQQVG QIDHSAILFM 240 NEFNTLEQPG DPTRYPGNGG LKLGVGLESH FATPNLPYMR SALDTLAKLK MPMWLTEVDV 300 VKSPNQVKFL EQVLREGFSH PNVDGIVMWA AWHAKGCYVM CLTDNNFKNL PVGDLVDKLI 360 AEWKTHRASA TTDDDGAVEL DLPLGEYKFM VTHPSLKGPA VHTMTVDTSS SASEHTINIK 420 S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 3.0e-26 | 93 | 300 | 227 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-41 | 90 | 329 | 267 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-71 | 123 | 356 | 265 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM08566.1 | 0 | 1 | 420 | 92 | 540 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
DDBJ | BAD06323.1 | 0 | 1 | 420 | 124 | 573 | putative 1,4-beta-xylanase [Triticum aestivum] |
GenBank | EEC66792.1 | 0 | 1 | 420 | 129 | 577 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
RefSeq | NP_001064415.1 | 0 | 1 | 420 | 129 | 577 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002461545.1 | 0 | 1 | 421 | 116 | 567 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 7e-26 | 92 | 356 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1xyz_B | 7e-20 | 104 | 330 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 7e-20 | 104 | 330 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1ta3_B | 6e-18 | 92 | 330 | 17 | 269 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1e0v_A | 9e-17 | 89 | 330 | 13 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL788487 | 246 | 156 | 387 | 0 |
FL816029 | 260 | 46 | 277 | 0 |
FL833802 | 242 | 79 | 306 | 0 |
FL764620 | 248 | 61 | 292 | 0 |
FL803852 | 210 | 227 | 422 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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