y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00066842m |
Family | GH14 |
Protein Properties | Length: 417 Molecular Weight: 43567.7 Isoelectric Point: 5.0818 |
Chromosome | Chromosome/Scaffold: 0203104 Start: 1 End: 1412 |
Description | beta-amylase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 84 | 407 | 0 |
FVGLPADVVVSDGRGVSRPRAVSAALRALSLLGVDGVELPVSWAAVQPGSGGWFEWAGSRAVAAMVRDAGLDLRVSLRTDGDAVPEWVADAAAADPDVLF TDRNGHRREGCLSFAVDELPVLVGKSPLEAYEAFFRSFADEFKDLLGSTITDVTVSLGPNGELRYPSYPPGSNGADGYSGAGEFQCYDKYTLARLKRHAE SSGQPLWGLSGPHDGPRYDESPESSAFFREPGGSWESAYGEFFLSWYAGELLVHGDRVLAAASRAFGGQPVELSARVPLLRGSSRPAEAAAGLHGGYGPV AAMFARRGCTVIACGVGARLDPPA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MEAVLMQRAA AARWGFVGEA ATGGAGQQPA GVFRLGAARR APGGAVRASR LGGPVRAHVS 60 EERSREAAGE AVAVAEEEDA VRLFVGLPAD VVVSDGRGVS RPRAVSAALR ALSLLGVDGV 120 ELPVSWAAVQ PGSGGWFEWA GSRAVAAMVR DAGLDLRVSL RTDGDAVPEW VADAAAADPD 180 VLFTDRNGHR REGCLSFAVD ELPVLVGKSP LEAYEAFFRS FADEFKDLLG STITDVTVSL 240 GPNGELRYPS YPPGSNGADG YSGAGEFQCY DKYTLARLKR HAESSGQPLW GLSGPHDGPR 300 YDESPESSAF FREPGGSWES AYGEFFLSWY AGELLVHGDR VLAAASRAFG GQPVELSARV 360 PLLRGSSRPA EAAAGLHGGY GPVAAMFARR GCTVIACGVG ARLDPPAEEA LARVKGA 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 4.0e-46 | 118 | 416 | 322 | + beta-amylase | ||
PLN02801 | PLN02801 | 3.0e-49 | 118 | 391 | 294 | + beta-amylase | ||
PLN02161 | PLN02161 | 3.0e-49 | 119 | 397 | 305 | + beta-amylase | ||
PLN00197 | PLN00197 | 9.0e-58 | 118 | 391 | 293 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-64 | 118 | 391 | 293 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95933.1 | 0 | 1 | 399 | 1 | 400 | Glycosyl hydrolase family 14 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EAZ05063.1 | 0 | 76 | 404 | 70 | 411 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
RefSeq | NP_001060573.1 | 0 | 76 | 404 | 70 | 411 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151271.1 | 0 | 13 | 417 | 19 | 428 | beta-amylase [Zea mays] |
RefSeq | XP_002467860.1 | 0 | 13 | 417 | 16 | 420 | hypothetical protein SORBIDRAFT_01g035370 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wds_A | 0 | 79 | 397 | 10 | 343 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1b1y_A | 0 | 79 | 394 | 4 | 333 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 2dqx_A | 0 | 79 | 390 | 10 | 335 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1q6g_A | 0 | 79 | 402 | 10 | 347 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1ukp_D | 0 | 79 | 390 | 10 | 335 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL869001 | 236 | 182 | 417 | 0 |
FL749726 | 236 | 182 | 417 | 0 |
FL759360 | 179 | 182 | 360 | 0 |
FE627453 | 179 | 227 | 405 | 0 |
FL890384 | 175 | 243 | 417 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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