| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00066998m |
| Family | PL1 |
| Protein Properties | Length: 233 Molecular Weight: 25820.3 Isoelectric Point: 8.0318 |
| Chromosome | Chromosome/Scaffold: 0202650 Start: 1428 End: 2126 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 87 | 216 | 1.3e-36 |
| PLWIIFKRDMVITLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDAVSIFGASHIWVDHCSL ANCADGLIDAIMGSTAITVSNNYFTHHNEV | |||
| Full Sequence |
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| Protein Sequence Length: 233 Download |
| RSIRNSTARR NLGYLSCGTG NPIDDCWRCD PDWHKNRQRL ADCGIGFGRN AIGGRDGKIY 60 VVTDPSDDDA VNPRKGTLRY AVIQDEPLWI IFKRDMVITL KQELIMNSFK TIDGRGANVH 120 IANGACITIQ YVTNVIIHGL HIHDCKPTGN AMVRSSPSHY GWRTIADGDA VSIFGASHIW 180 VDHCSLANCA DGLIDAIMGS TAITVSNNYF THHNEVVRPH TRSYPLFFLI LQ* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-11 | 108 | 216 | 118 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-32 | 101 | 217 | 139 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-39 | 95 | 216 | 133 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02420.2 | 0 | 2 | 224 | 105 | 328 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC76710.1 | 0 | 2 | 224 | 106 | 329 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
| GenBank | EEE60442.1 | 0 | 2 | 224 | 76 | 299 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001052103.1 | 0 | 2 | 224 | 106 | 329 | Os04g0137100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002446075.1 | 0 | 2 | 224 | 85 | 308 | hypothetical protein SORBIDRAFT_06g001410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 21 | 224 | 2 | 207 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 21 | 224 | 2 | 207 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00001 | 40 | 216 | 2 | 164 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.0005 | 101 | 217 | 73 | 199 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 2o1d_A | 0.002 | 111 | 215 | 130 | 247 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL748690 | 224 | 2 | 224 | 0 |
| EB663354 | 224 | 2 | 224 | 0 |
| AJ701403 | 217 | 1 | 217 | 0 |
| DR829900 | 210 | 2 | 211 | 0 |
| GR195813 | 217 | 1 | 217 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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