Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00067407m |
Family | GT8 |
Protein Properties | Length: 556 Molecular Weight: 63577 Isoelectric Point: 8.9468 |
Chromosome | Chromosome/Scaffold: 020399 Start: 1868 End: 4461 |
Description | galacturonosyltransferase 10 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 215 | 528 | 0 |
CLGVRLTMEWFKNSELQRKFSDRSPVVQNNLRDNSLYHFCVFSDNILAVSVVVNSTATNSKHPEKIVFHLVTDELNYAPMRAWFAMSDYRGVTVEIQKVE DFTWLNASYVPVLKQLQNTATQKFYFSGSGNRGTPIKFRNPKYLSMLNHLRFYIPEIYPELQKVVFLDDDIVVQKDLSELFTINLNGNVMGAVETCMETF HRFHKYLNHSHPLIRAHFDPDACGWAFGMNVLDLVEWRNKNVTGIYHYWQERNADHTLWKLGSLPPGLLAFYGLVEALDPKWHVLGLGYTTVDPATIKEG AVLHYNGNMKPWLK |
Full Sequence |
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Protein Sequence Length: 556 Download |
MRRRPFLDQR RPSFKRRWQQ RPWWVRLALS LLFALACVLL LTVILGSPDP GASPSTSTAS 60 SGTEATSSPL LRQRSYLEGI TDALNMTDEM LSARSFSRQL MDQIYLAKSY VVVAKEANNL 120 QFAAELSAQV RRAQSILVHA AAHGGTVLEQ EAEKAIRDMS VLLFQAQQLR YDSGITIMKL 180 KGQIQSLEEK SKAEAEKSTK YGQIAAEELP KGLYCLGVRL TMEWFKNSEL QRKFSDRSPV 240 VQNNLRDNSL YHFCVFSDNI LAVSVVVNST ATNSKHPEKI VFHLVTDELN YAPMRAWFAM 300 SDYRGVTVEI QKVEDFTWLN ASYVPVLKQL QNTATQKFYF SGSGNRGTPI KFRNPKYLSM 360 LNHLRFYIPE IYPELQKVVF LDDDIVVQKD LSELFTINLN GNVMGAVETC METFHRFHKY 420 LNHSHPLIRA HFDPDACGWA FGMNVLDLVE WRNKNVTGIY HYWQERNADH TLWKLGSLPP 480 GLLAFYGLVE ALDPKWHVLG LGYTTVDPAT IKEGAVLHYN GNMKPWLKIG MEKYKSFWDN 540 YVDYSHPLIQ QCFMR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02718 | PLN02718 | 5.0e-119 | 98 | 552 | 459 | + Probable galacturonosyltransferase | ||
PLN02910 | PLN02910 | 5.0e-152 | 99 | 552 | 468 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
PLN02523 | PLN02523 | 2.0e-153 | 148 | 552 | 410 | + galacturonosyltransferase | ||
PLN02829 | PLN02829 | 6.0e-171 | 90 | 552 | 465 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 0 | 2 | 555 | 558 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN27553.1 | 0 | 1 | 555 | 1 | 555 | unknown [Zea mays] |
GenBank | EEC78094.1 | 0 | 1 | 553 | 1 | 554 | hypothetical protein OsI_17583 [Oryza sativa Indica Group] |
RefSeq | NP_001054014.1 | 0 | 1 | 553 | 1 | 554 | Os04g0636100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001140891.1 | 0 | 1 | 555 | 1 | 555 | hypothetical protein LOC100272968 [Zea mays] |
RefSeq | XP_002447180.1 | 0 | 1 | 555 | 1 | 555 | hypothetical protein SORBIDRAFT_06g029980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.00006 | 354 | 526 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.001 | 354 | 526 | 75 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.001 | 354 | 526 | 75 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |