PlantCAZyme

Basic Information
Species	Panicum virgatum
Cazyme ID	Pavirv00067617m
Family	CE8
Protein Properties	Length: 368 Molecular Weight: 39482.8 Isoelectric Point: 5.3004
Chromosome	Chromosome/Scaffold: 0205723 Start: 972 End: 2175
Description	Plant invertase/pectin methylesterase inhibitor superfamily
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
CE8	240	368	9e-38
NVTVAADGSGDVKTIKEALARVPPKNAAMYVVYVKAGTYKEYVSVGRPQTNVAFIGDGADKTIITGNKNFKMNLTTKDTATMEAIGNGFFMKGVRAVALR VQSDQAVFYQCTFDGYQDTLYTHAQRRVF

Full Sequence
Protein Sequence Length: 368 Download
MSKGAIIGAS TVLVVAVVAA VCVVSFKGNS SKGEGEGDGN LSMSVKSVKA FCQPTDYQQT 60 CEAELSKAAG NATSPTELAK AIFAVTSDKI HKAISESATL NELKNDKRTS GALQNCKELL 120 EYAIDDLKAT FDKLGGFEMT NFKKAVDDLK TWLSAALTYQ DTCLDGFANA TTTEASAKMQ 180 SALNASQELT EDILAVVDQF SDTLGGLSVG RRLLGEDGMP AWMMGDSRRL LEESPEFKPN 240 VTVAADGSGD VKTIKEALAR VPPKNAAMYV VYVKAGTYKE YVSVGRPQTN VAFIGDGADK 300 TIITGNKNFK MNLTTKDTAT MEAIGNGFFM KGVRAVALRV QSDQAVFYQC TFDGYQDTLY 360 THAQRRVF

Full Sequence

Protein Sequence Length: 368 Download

MSKGAIIGAS TVLVVAVVAA VCVVSFKGNS SKGEGEGDGN LSMSVKSVKA FCQPTDYQQT    60
CEAELSKAAG NATSPTELAK AIFAVTSDKI HKAISESATL NELKNDKRTS GALQNCKELL    120
EYAIDDLKAT FDKLGGFEMT NFKKAVDDLK TWLSAALTYQ DTCLDGFANA TTTEASAKMQ    180
SALNASQELT EDILAVVDQF SDTLGGLSVG RRLLGEDGMP AWMMGDSRRL LEESPEFKPN    240
VTVAADGSGD VKTIKEALAR VPPKNAAMYV VYVKAGTYKE YVSVGRPQTN VAFIGDGADK    300
TIITGNKNFK MNLTTKDTAT MEAIGNGFFM KGVRAVALRV QSDQAVFYQC TFDGYQDTLY    360
THAQRRVF 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02468	PLN02468	6.0e-70	27	368	360	+ putative pectinesterase/pectinesterase inhibitor
PLN02990	PLN02990	3.0e-73	27	368	369	+ Probable pectinesterase/pectinesterase inhibitor
PLN02314	PLN02314	1.0e-74	47	368	348	+ pectinesterase
PLN02745	PLN02745	3.0e-77	46	368	352	+ Putative pectinesterase/pectinesterase inhibitor
PLN02217	PLN02217	4.0e-94	31	368	353	+ probable pectinesterase/pectinesterase inhibitor

Gene Ontology
GO Term	Description
GO:0004857	enzyme inhibitor activity
GO:0005618	cell wall
GO:0030599	pectinesterase activity
GO:0042545	cell wall modification

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	EAZ05229.1	0	41	368	38	384	hypothetical protein OsI_27427 [Oryza sativa Indica Group]
GenBank	EAZ41174.1	0	41	368	38	384	hypothetical protein OsJ_25671 [Oryza sativa Japonica Group]
RefSeq	NP_001060715.1	0	41	368	38	384	Os07g0691100 [Oryza sativa (japonica cultivar-group)]
RefSeq	NP_001151322.1	0	27	368	27	384	pectinesterase-1 [Zea mays]
RefSeq	XP_002461260.1	0	27	368	27	388	hypothetical protein SORBIDRAFT_02g043780 [Sorghum bicolor]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1gq8_A	3e-32	233	368	1	147	A Chain A, Pectin Methylesterase From Carrot
PDB	1xg2_A	5e-28	240	368	4	143	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	3uw0_A	0.002	240	368	32	191	A Chain A, Pectin Methylesterase From Yersinia Enterocolitica

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
homogalacturonan degradation	RXN-2102	EC-3.1.1.11	pectinesterase

Transmembrane Domains

Start	End
4	26

Signal Peptide

Cleavage Site
20

EST Download unfiltered results here

Hit	Length	Start	End	EValue
FL780666	266	25	284	0
FL834848	266	27	284	0
FL761675	230	93	316	0
FL834848	35	26	60	0.000000000001
FL761675	19	316	334	0.05

Orthologous Group
Species	ID
Glycine max	Glyma0248s00200.1
Panicum virgatum	Pavirv00036753m
Phaseolus vulgaris	Phvul.005G103500.1.187.314	Phvul.005G103500.1.187.314
Zea mays	AC212451.4_FGT009

CAZyme Information