| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00068158m |
| Family | GH33 |
| Protein Properties | Length: 328 Molecular Weight: 36507.5 Isoelectric Point: 4.6251 |
| Chromosome | Chromosome/Scaffold: 008712 Start: 3156 End: 5020 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 25 | 312 | 1.8e-28 |
| FNSCHASTIVQIEEDNFLVAYFGGSREGAPDVKIWLQRYSDGCWHPPVVADEQDGVPMWNPVLFQLPSHELLLFYKIGQEVQKWSGAMKRSLDGGITWSQ REQLPPGILGPIKNKPSLLEDGRLLCGSSVESWNSWGAWLEVTEDAGRTWRKYGPICIEGEPLGVIQPVPYQTANGTIRVLLRSFETIGRVCIADSIDEG VTWSYVHETELPNPNSGIDGVKMKDGRVLLAYNTFSRGTLKIAISSNDGDSWDEVMTLEDTQGMEFSYPAVIQTMDELIHVTYTYNRT | |||
| Full Sequence |
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| Protein Sequence Length: 328 Download |
| MTTNVTSGWS IVKEEFILPA SGALFNSCHA STIVQIEEDN FLVAYFGGSR EGAPDVKIWL 60 QRYSDGCWHP PVVADEQDGV PMWNPVLFQL PSHELLLFYK IGQEVQKWSG AMKRSLDGGI 120 TWSQREQLPP GILGPIKNKP SLLEDGRLLC GSSVESWNSW GAWLEVTEDA GRTWRKYGPI 180 CIEGEPLGVI QPVPYQTANG TIRVLLRSFE TIGRVCIADS IDEGVTWSYV HETELPNPNS 240 GIDGVKMKDG RVLLAYNTFS RGTLKIAISS NDGDSWDEVM TLEDTQGMEF SYPAVIQTMD 300 ELIHVTYTYN RTQMKRVVLQ PSAMVKL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.0002 | 108 | 279 | 198 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| cd00260 | Sialidase | 0.0001 | 111 | 278 | 205 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 5.0e-30 | 17 | 321 | 360 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 7.0e-94 | 39 | 305 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 2 | 315 | 99 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 35 | 324 | 421 | 684 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEE67268.1 | 0 | 2 | 315 | 599 | 912 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059779.1 | 0 | 2 | 326 | 99 | 423 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002460769.1 | 0 | 7 | 326 | 87 | 411 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.002 | 111 | 246 | 449 | 574 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.002 | 111 | 246 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FF344386 | 262 | 51 | 312 | 0 |
| EL689016 | 287 | 20 | 306 | 0 |
| FF595784 | 234 | 20 | 253 | 0 |
| HO308267 | 217 | 112 | 328 | 0 |
| JG834112 | 211 | 85 | 295 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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