Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00068431m |
Family | AA7 |
Protein Properties | Length: 565 Molecular Weight: 59187.9 Isoelectric Point: 8.965 |
Chromosome | Chromosome/Scaffold: 008370 Start: 9051 End: 10745 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 84 | 557 | 0 |
ALPGVRKPAAVVLPASRRDLRRAVLCARRAAAAIRVRSGGHSYEGQSYTVAGAALGDGGAPFVVVDLMNLNRVRVDAASATAWAESGATLGEVYHAVART ASPNGSSSSSSLAFAAGSCSTVGVGGHVSGGGFGLLSRKFMLAADNVLDALLVDAEGRVLNRGAMGEDVFWAIRGGGGGSWGVVYAWKLRLVPVPDTVTV FTPSREGSVDAIAGLVHRWQFVGPALPDEFYLSVFLTIGGASQEDTNVTVSFTGLVLGPRELAMSVLSERFPELGLAATELSEMSWVESAAQFAGLGSAE ELTSRVSKTKHYGKNKSDYVRQPVARDALAAILRYLSAGPAGYVILDPYGGAMARAGATDTPFPHRAGNLYGVQYGVTWDADDDGEARMSWLRALYAYMA PHVSSGPRAAYVNYIDLDLGTVAATAAANRSATAVDRARETWGASYFSAENFDRLVRAKTRIDPANVFNNAQSI |
Full Sequence |
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Protein Sequence Length: 565 Download |
MTNTMAPTIC SSNRAALLFP GLILNFLLLS TRHNAAASGN GVHAGASRSL ASCLVASGVR 60 NFSLAGSPAY SSLLGFSVQN LRFALPGVRK PAAVVLPASR RDLRRAVLCA RRAAAAIRVR 120 SGGHSYEGQS YTVAGAALGD GGAPFVVVDL MNLNRVRVDA ASATAWAESG ATLGEVYHAV 180 ARTASPNGSS SSSSLAFAAG SCSTVGVGGH VSGGGFGLLS RKFMLAADNV LDALLVDAEG 240 RVLNRGAMGE DVFWAIRGGG GGSWGVVYAW KLRLVPVPDT VTVFTPSREG SVDAIAGLVH 300 RWQFVGPALP DEFYLSVFLT IGGASQEDTN VTVSFTGLVL GPRELAMSVL SERFPELGLA 360 ATELSEMSWV ESAAQFAGLG SAEELTSRVS KTKHYGKNKS DYVRQPVARD ALAAILRYLS 420 AGPAGYVILD PYGGAMARAG ATDTPFPHRA GNLYGVQYGV TWDADDDGEA RMSWLRALYA 480 YMAPHVSSGP RAAYVNYIDL DLGTVAATAA ANRSATAVDR ARETWGASYF SAENFDRLVR 540 AKTRIDPANV FNNAQSIPPL QRHD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 2.0e-14 | 493 | 558 | 66 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD03275.1 | 0 | 46 | 561 | 27 | 548 | putative berberine bridge enzyme [Oryza sativa Japonica Group] |
DDBJ | BAF23509.2 | 0 | 46 | 561 | 31 | 552 | Os08g0343600 [Oryza sativa Japonica Group] |
RefSeq | NP_001061595.1 | 0 | 38 | 561 | 27 | 556 | Os08g0343600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001140781.1 | 0 | 48 | 560 | 34 | 548 | hypothetical protein LOC100272856 [Zea mays] |
RefSeq | XP_002445086.1 | 0 | 11 | 560 | 2 | 559 | hypothetical protein SORBIDRAFT_07g003920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4ec3_A | 0 | 43 | 564 | 1 | 504 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
PDB | 3gsy_A | 0 | 43 | 564 | 1 | 504 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3d2j_A | 0 | 44 | 564 | 21 | 523 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3d2h_A | 0 | 44 | 564 | 21 | 523 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3d2d_A | 0 | 44 | 564 | 21 | 523 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
berberine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
dehydroscoulerine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
sanguinarine and macarpine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |