| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00068567m |
| Family | GT5 |
| Protein Properties | Length: 759 Molecular Weight: 82526.5 Isoelectric Point: 6.3541 |
| Chromosome | Chromosome/Scaffold: 009126 Start: 894 End: 5968 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 268 | 751 | 0 |
| NVIVVSAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVPRYGDYAEAFDMGITKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQGDIYGGNRQ EIMKRMILFCKVAVEVPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGIMQYTRSVLVIHNIAHQGRGPVAEYPYMDLPEHYLQHFELYDPV GGEHANIFAAGLKMADQVVTVSRGYLWELKTVEGGWGLHDIIRSHDWKMNGIVNGIDHQEWSPEVDVHLRSDGYTNYSLRTLDAGKRQCKAALQRELGLE VRDDVPLLGFIGRLDGQKGVDIIGDAMPWLAGQDVQLVMLGAGRADLERMLQQLERAHHDKVRGWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFGGAGLGWTFDRAEPNKLIEALGHCLDTYRKYRESWRGIQARGMSQDLSWDHAAELYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 759 Download |
| MSSAAASSAF ILALSSGTPG WRSRGGASLN FPLWAPPRRA ARDDAMVARA AEAGTGGRDA 60 APPERSAGAG ADASIRQPRA RRKAVSRRRD PVQPAGRYGS GPGNAAASQN GALAGGEIDS 120 IVAAPPASIV KFAGPGYTVI LPTQDVAPTR GVVPAPEPPL PPSEENFVSR PASVPKPRTD 180 GNAGLAEKRR AMVDVERVPN PIPPPPPAPK PEPAVQEQEG AWDFKKYIGF DEPDETKDEA 240 GVGADAAGSF ADYENDDPSP LAGENVMNVI VVSAECSPWC KTGGLGDVAG ALPKALARRG 300 HRVMVVVPRY GDYAEAFDMG ITKYYKAAGQ DLEVKYFHAF IDGVDFVFID APLFRHRQGD 360 IYGGNRQEIM KRMILFCKVA VEVPWHVPCG GVCYGDGNLV FIANDWHTAL LPVYLKAYYR 420 DNGIMQYTRS VLVIHNIAHQ GRGPVAEYPY MDLPEHYLQH FELYDPVGGE HANIFAAGLK 480 MADQVVTVSR GYLWELKTVE GGWGLHDIIR SHDWKMNGIV NGIDHQEWSP EVDVHLRSDG 540 YTNYSLRTLD AGKRQCKAAL QRELGLEVRD DVPLLGFIGR LDGQKGVDII GDAMPWLAGQ 600 DVQLVMLGAG RADLERMLQQ LERAHHDKVR GWVGFSVPMA HRITAGADVL LMPSRFEPCG 660 LNQLYAMAYG TVPVVHAVGG LRDTVAPFDP FGGAGLGWTF DRAEPNKLIE ALGHCLDTYR 720 KYRESWRGIQ ARGMSQDLSW DHAAELYEEV LVKAKYQW* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-78 | 267 | 749 | 506 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 9.0e-129 | 267 | 756 | 506 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-157 | 267 | 751 | 498 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 267 | 754 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 268 | 751 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD13341.1 | 0 | 9 | 758 | 12 | 732 | starch synthase isoform zSTSII-1 [Zea mays] |
| GenBank | AAS77569.1 | 0 | 9 | 758 | 12 | 729 | starch synthase IIa [Zea mays] |
| GenBank | ACC86844.1 | 0 | 9 | 758 | 12 | 743 | starch synthase IIa precursor [Sorghum bicolor] |
| GenBank | ACR34914.1 | 0 | 9 | 758 | 12 | 732 | unknown [Zea mays] |
| RefSeq | XP_002436755.1 | 0 | 9 | 758 | 12 | 763 | hypothetical protein SORBIDRAFT_10g008200 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 267 | 752 | 10 | 509 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3vue_A | 0 | 267 | 752 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 267 | 755 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 267 | 757 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 267 | 757 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 312 | 448 | 759 | 0 |
| HO777841 | 195 | 254 | 448 | 0 |
| HO781048 | 392 | 368 | 759 | 0 |
| HO445868 | 437 | 323 | 759 | 0 |
| HO781048 | 43 | 329 | 371 | 0.4 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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