| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00068607m |
| Family | GH28 |
| Protein Properties | Length: 462 Molecular Weight: 50491.4 Isoelectric Point: 7.8882 |
| Chromosome | Chromosome/Scaffold: 008345 Start: 8007 End: 10170 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 386 | 0 |
| DDCAAAGGGRVLLPAPGNYLTATVHLRSRVVLEVAPGARLLGGTRQADYPPESRHWYVVLAENTTGAGITGGGEINGQGGAFVVTPSEVKNVMVSWNATG DCLGDECRPRLVGFIDSKDVRIHDITLNQPAYWCLHLVRCGNTVIRNVSIFGDFKSPNNDGIDITDSNNTVITDCHIDTGDDALCPKSSAGPVYNLTATN CWIRTKSCAIKFGSASFFNFNKLVFDNITIVDSHRGLGMQIRDGGNVSDVLFSNIKMSTRYYHPLWWGRAEPIYITTCSRYPDSKEGTISDIRFINISSV SENGVFLAGSKHGLLRNLKFKNVDLTYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 462 Download |
| MASPPLQFAA APLLLLLLLV AVVPAARSSR VFSVTDYGAA GDGSRYDTVA IQAAVDDCAA 60 AGGGRVLLPA PGNYLTATVH LRSRVVLEVA PGARLLGGTR QADYPPESRH WYVVLAENTT 120 GAGITGGGEI NGQGGAFVVT PSEVKNVMVS WNATGDCLGD ECRPRLVGFI DSKDVRIHDI 180 TLNQPAYWCL HLVRCGNTVI RNVSIFGDFK SPNNDGIDIT DSNNTVITDC HIDTGDDALC 240 PKSSAGPVYN LTATNCWIRT KSCAIKFGSA SFFNFNKLVF DNITIVDSHR GLGMQIRDGG 300 NVSDVLFSNI KMSTRYYHPL WWGRAEPIYI TTCSRYPDSK EGTISDIRFI NISSVSENGV 360 FLAGSKHGLL RNLKFKNVDL TYKRWTNYTG GLYDYRPGCE KMVKHKTGGM MLEHISGLEI 420 DNVRMRWARG NLKGWDVNPI LFRPSTIDKL SFHDWQSVEV Q* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 4.0e-8 | 163 | 309 | 197 | + Probable polygalacturonase At3g15720 |
| PLN02793 | PLN02793 | 9.0e-9 | 152 | 380 | 249 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 8.0e-9 | 164 | 383 | 230 | + polygalacturonase/glycoside hydrolase family protein |
| pfam00295 | Glyco_hydro_28 | 2.0e-13 | 164 | 382 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| COG5434 | PGU1 | 5.0e-29 | 35 | 313 | 313 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 30 | 460 | 25 | 455 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 30 | 460 | 25 | 454 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 30 | 460 | 25 | 450 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 25 | 461 | 21 | 457 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 30 | 461 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-16 | 30 | 243 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-16 | 30 | 243 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-16 | 30 | 243 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-16 | 30 | 243 | 26 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.0000000002 | 30 | 246 | 155 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
