Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00068858m |
Family | GH28 |
Protein Properties | Length: 335 Molecular Weight: 36139.3 Isoelectric Point: 7.2968 |
Chromosome | Chromosome/Scaffold: 009764 Start: 10528 End: 12851 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 297 | 0 |
SGNIVAPEGPSDWGPGERRQWLHFHKVQDLKVTGGGIIDGRGQQWWAREGKKNRTAQPAPKAVHFEDCQGISVKGITLQNSQQYHLTFTRSSNVEANYLR VTSPEDSVDTKGIHLVDSKNVHVMDNLISTGDDCVSIVGNCTDVRLRAIACGPGHGISIGTLGVNGSVDYVEKIKVDTLFISNAGNGVRVKTTKNGVGGF ARKVKFESIVMRNVTNPIIVDQGNSDDPADSSEAPTAARAVQVEKINYIDIRGTSASEHAVTFSCSDAKPCRHLSLTNVNLSRVDGRKASSYCRKA |
Full Sequence |
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Protein Sequence Length: 335 Download |
ISGNIVAPEG PSDWGPGERR QWLHFHKVQD LKVTGGGIID GRGQQWWARE GKKNRTAQPA 60 PKAVHFEDCQ GISVKGITLQ NSQQYHLTFT RSSNVEANYL RVTSPEDSVD TKGIHLVDSK 120 NVHVMDNLIS TGDDCVSIVG NCTDVRLRAI ACGPGHGISI GTLGVNGSVD YVEKIKVDTL 180 FISNAGNGVR VKTTKNGVGG FARKVKFESI VMRNVTNPII VDQGNSDDPA DSSEAPTAAR 240 AVQVEKINYI DIRGTSASEH AVTFSCSDAK PCRHLSLTNV NLSRVDGRKA SSYCRKAFGK 300 SIGTVIPESC LSSEDYAQHV PRHPEEGREE DSDS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02155 | PLN02155 | 2.0e-58 | 1 | 312 | 312 | + polygalacturonase |
PLN02188 | PLN02188 | 4.0e-59 | 17 | 310 | 297 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 1.0e-66 | 1 | 294 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 8.0e-69 | 1 | 308 | 313 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 2.0e-103 | 1 | 313 | 317 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY98883.1 | 0 | 1 | 316 | 92 | 413 | hypothetical protein OsI_20839 [Oryza sativa Indica Group] |
GenBank | EEE64554.1 | 0 | 1 | 316 | 98 | 419 | hypothetical protein OsJ_19406 [Oryza sativa Japonica Group] |
RefSeq | NP_001056199.1 | 0 | 1 | 316 | 98 | 419 | Os05g0542900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151374.1 | 0 | 1 | 334 | 91 | 429 | polygalacturonase [Zea mays] |
RefSeq | XP_002440168.1 | 0 | 1 | 334 | 91 | 423 | hypothetical protein SORBIDRAFT_09g027160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 33 | 283 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-17 | 3 | 295 | 42 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 3 | 295 | 42 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-17 | 3 | 295 | 42 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-17 | 3 | 295 | 42 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GD048775 | 262 | 44 | 303 | 0 |
FL969331 | 254 | 44 | 296 | 0 |
FE609184 | 227 | 1 | 227 | 0 |
FL984336 | 211 | 44 | 254 | 0 |
FL984336 | 20 | 253 | 272 | 0.00003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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