| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00069057m |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 41834.5 Isoelectric Point: 8.968 |
| Chromosome | Chromosome/Scaffold: 0100432 Start: 1044 End: 2843 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 392 | 0 |
| ADACRSTRPATVFVPPGRYLVSSATFTGPCHSRAAVTFAVAGTVVAPAGSGGRGSSGRWITFENVDGLVVSGGTLDGRGRALWECRRRGQGSCPTPASSL TIANSRDVVVAGVRSVDSELFHLVVLQCHGVTVRGVTVEAPADSPNTDGIHLHMSSQVSVYDARISTGDDCISIGPGNSHIWIERVACGPGHGISIGSLG KQEGMAVEGVQNVTVKTTWFTGTTNGLRIKTWGGSKRGFVRGVTFADATMSGVDNPIIIDQRYCPTSGGGCPGGSSSISISDVRYVGVRGSSATPVAVSF DCSRSNPCSGIRLQDVALTYRNRPAAARSYCRNARGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MAMAKPLLSL LAHLHAALLF QPADPAAGAM MYNVLRYGAR PDGAADAAGP FLRAWADACR 60 STRPATVFVP PGRYLVSSAT FTGPCHSRAA VTFAVAGTVV APAGSGGRGS SGRWITFENV 120 DGLVVSGGTL DGRGRALWEC RRRGQGSCPT PASSLTIANS RDVVVAGVRS VDSELFHLVV 180 LQCHGVTVRG VTVEAPADSP NTDGIHLHMS SQVSVYDARI STGDDCISIG PGNSHIWIER 240 VACGPGHGIS IGSLGKQEGM AVEGVQNVTV KTTWFTGTTN GLRIKTWGGS KRGFVRGVTF 300 ADATMSGVDN PIIIDQRYCP TSGGGCPGGS SSISISDVRY VGVRGSSATP VAVSFDCSRS 360 NPCSGIRLQD VALTYRNRPA AARSYCRNAR GSTLGLVLPP SCL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02218 | PLN02218 | 1.0e-62 | 51 | 399 | 356 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 4.0e-72 | 59 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02793 | PLN02793 | 7.0e-73 | 51 | 403 | 357 | + Probable polygalacturonase |
| PLN02188 | PLN02188 | 1.0e-85 | 27 | 402 | 382 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 3.0e-88 | 26 | 403 | 378 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36955.1 | 0 | 120 | 403 | 1 | 285 | unknown [Zea mays] |
| GenBank | EAZ14447.1 | 0 | 3 | 403 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
| RefSeq | NP_001045053.1 | 0 | 3 | 403 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001141204.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein LOC100273291 [Zea mays] |
| RefSeq | XP_002456767.1 | 0 | 1 | 403 | 1 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-20 | 128 | 338 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000003 | 124 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 124 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 124 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 124 | 346 | 74 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
