| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00069322m |
| Family | GH51 |
| Protein Properties | Length: 669 Molecular Weight: 73195.7 Isoelectric Point: 6.6465 |
| Chromosome | Chromosome/Scaffold: 008681 Start: 7796 End: 12471 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 199 | 544 | 0 |
| FAKWTKIEFNLKSRQNNINSRLQLTTSKSGVIWLDQVSVMPLDTYMGHGFRKDLSLMLANLKPQFLKFPGGNYAMGNYLRNAFRWSETVGPWEERPGHFN DAWGYWTDDGLGFFEFLQLAEDLGASPVWVVNDGASLNEEVSTATIASLVKDVVDGIEFARGGPKTPWGSVRAAMGHPEPFNLDYVSIGNQECWMLYYRG NYQKFYSAIKAAYPEVNIISSCDRSTISPSNPADLYDVHVYTSSSNMFSRTSMFDNTPRSAPKAIVSEYAVTGNDAGKGTLVAALAEAAFLIGLERNSDV VEMASCAPLFVNDNDRRWSPDAIVFNSWQHYGCPNYWMLHFFKDSS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 669 Download |
| MGVQRQVARA PALLHALAVV CAVCWALSAR YVEGQSQTGQ LRVDASPQNA RKIPDKMFGI 60 FFEEINHAGA GGLWAELVSN RGFEAGGPNT PSNIDPWLII GDESSIIVGT DRTSCFARNP 120 IALRMEVLCD SKRTNACPSG GVGVYNPGYW GMNIEKGKVY KVSMHIRSSD AVSLTVSLTS 180 SDGRQKLSAH TITGSKKSFA KWTKIEFNLK SRQNNINSRL QLTTSKSGVI WLDQVSVMPL 240 DTYMGHGFRK DLSLMLANLK PQFLKFPGGN YAMGNYLRNA FRWSETVGPW EERPGHFNDA 300 WGYWTDDGLG FFEFLQLAED LGASPVWVVN DGASLNEEVS TATIASLVKD VVDGIEFARG 360 GPKTPWGSVR AAMGHPEPFN LDYVSIGNQE CWMLYYRGNY QKFYSAIKAA YPEVNIISSC 420 DRSTISPSNP ADLYDVHVYT SSSNMFSRTS MFDNTPRSAP KAIVSEYAVT GNDAGKGTLV 480 AALAEAAFLI GLERNSDVVE MASCAPLFVN DNDRRWSPDA IVFNSWQHYG CPNYWMLHFF 540 KDSSGAALHP TNIEISDYDQ LVASAITLQN AKDKSTYLRI KVVNFGNRAV DLNISVVGLA 600 NSIKMSGSKQ TVLTSSSPLD ENSFEQPEKV APVSSPLANA KPQMGVSVRP YSLTSFDLLL 660 EASEHASI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.003 | 75 | 224 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3534 | AbfA | 1.0e-7 | 478 | 652 | 193 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 6.0e-27 | 247 | 389 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 8.0e-39 | 465 | 652 | 205 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-49 | 465 | 652 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 1 | 663 | 1 | 660 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACR35485.1 | 0 | 1 | 668 | 1 | 663 | unknown [Zea mays] |
| DDBJ | BAC10349.1 | 0 | 1 | 668 | 1 | 664 | putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I [Oryza sativa Japonica Group] |
| GenBank | EEC75141.1 | 0 | 1 | 663 | 1 | 664 | hypothetical protein OsI_11337 [Oryza sativa Indica Group] |
| RefSeq | XP_002463418.1 | 0 | 1 | 668 | 1 | 666 | hypothetical protein SORBIDRAFT_02g043530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 7e-19 | 247 | 661 | 68 | 504 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| PDB | 3ug5_E | 7e-19 | 247 | 661 | 68 | 504 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| PDB | 3ug5_D | 7e-19 | 247 | 661 | 68 | 504 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| PDB | 3ug5_C | 7e-19 | 247 | 661 | 68 | 504 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| PDB | 3ug5_B | 7e-19 | 247 | 661 | 68 | 504 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
