Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069462m |
Family | AA7 |
Protein Properties | Length: 422 Molecular Weight: 45209.1 Isoelectric Point: 9.4128 |
Chromosome | Chromosome/Scaffold: 008101 Start: 57 End: 1322 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 71 | 303 | 0 |
VRPLCVVAAANASHVQAAVLCGRRHGVRLRVRSGGHDYEGLSYRSVRPEEFAVVDLAGLRDVRVDRAAAAAWVGSGATVGELYYAVAAADPQLAFPAGVC PIIGVGGHFSGGGIGMMMRKHGLSVDNVLDATLVDASGRMLDRKAMGEDLFWAIRGGGGGSFGVVLSWKVRLVRVPPRVTAFTIQKTVAQGAIDAVTKWQ TLAPALPEELTIRVIIQNQQARFQSLYLGTCDQ |
Full Sequence |
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Protein Sequence Length: 422 Download |
MVVFAKAALA LLACVLCCYA PTPSSAAAAD FLRCLSASVP SQLVFTPGSP SFTSVLASSV 60 RNPRFLTLGT VRPLCVVAAA NASHVQAAVL CGRRHGVRLR VRSGGHDYEG LSYRSVRPEE 120 FAVVDLAGLR DVRVDRAAAA AWVGSGATVG ELYYAVAAAD PQLAFPAGVC PIIGVGGHFS 180 GGGIGMMMRK HGLSVDNVLD ATLVDASGRM LDRKAMGEDL FWAIRGGGGG SFGVVLSWKV 240 RLVRVPPRVT AFTIQKTVAQ GAIDAVTKWQ TLAPALPEEL TIRVIIQNQQ ARFQSLYLGT 300 CDQLLPVMSS RFPELGMSRA DCREMSWLQS ALYINTGSTG QPLEALLNRT TSLSTFTKNK 360 SDYVKQAITR ESWQKIFPWF NGPSAGLIIL EPHGGQVSRI ADGDTPYPHR SSVLYNIQHI 420 AF |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01565 | FAD_binding_4 | 3.0e-5 | 91 | 212 | 123 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD53702.1 | 0 | 1 | 422 | 1 | 422 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01289.1 | 0 | 21 | 422 | 25 | 428 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
RefSeq | NP_001057831.1 | 0 | 21 | 422 | 25 | 428 | Os06g0549600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001057833.1 | 0 | 1 | 422 | 6 | 427 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438541.1 | 0 | 1 | 422 | 1 | 430 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 20 | 422 | 1 | 403 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 20 | 422 | 1 | 403 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 23 | 422 | 3 | 403 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 23 | 422 | 3 | 403 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 23 | 422 | 3 | 403 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |