| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00069475m |
| Family | CE8 |
| Protein Properties | Length: 579 Molecular Weight: 59506 Isoelectric Point: 9.2998 |
| Chromosome | Chromosome/Scaffold: 008354 Start: 6349 End: 8622 |
| Description | pectin methylesterase 61 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 259 | 562 | 0 |
| AVVALDGSGTHRSINEAIAAVTAPVGTKASGRGGAGGSRRKVIHVKTGLYKESVSISYQQEDVMLVGDGKGKTIIGGDKSVAGGYTTYSSATLAAMGAGF IAKGLSIVNSAGPDKGQAVALLVGGDRSVVYQCEVKAHQDTLFTHSNRQFYAESDISGTVDFIFGNSAVVFQRCNIQARKPSPGQQDVVTAQGRDDPNQN TGISIHRCRIAGASDLGRTPVYLGRPWKRYARVAVMESTLDGSVAPAGWLAWPDQPAPSTTLYYGEYRNTGAGAETKGRVTWTGVHTSLSTADATGFTVE KFIM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 579 Download |
| METFGGASSP ERQAKRRLPI VAWSCAMATV LALATVAPVA AGKGDEAASM VGNAAAVSRI 60 AATSASAPPS SVNVTSICRS TPDPSACETA LTSAEARSAG DPFAASVQFA MARATTALSL 120 ARNLSASAPA SPPSGMHDCA ELLDISLAQL RDALEGRAAD AAGATTWLSA ALTNQGTCDD 180 SLAAAARGPA GRNAVRKQVA ALARFIRTAL ALHVNKVKGV PPPAATSSPN KGTVFPSWLP 240 EHDRRLLESP ATRVVTPDAV VALDGSGTHR SINEAIAAVT APVGTKASGR GGAGGSRRKV 300 IHVKTGLYKE SVSISYQQED VMLVGDGKGK TIIGGDKSVA GGYTTYSSAT LAAMGAGFIA 360 KGLSIVNSAG PDKGQAVALL VGGDRSVVYQ CEVKAHQDTL FTHSNRQFYA ESDISGTVDF 420 IFGNSAVVFQ RCNIQARKPS PGQQDVVTAQ GRDDPNQNTG ISIHRCRIAG ASDLGRTPVY 480 LGRPWKRYAR VAVMESTLDG SVAPAGWLAW PDQPAPSTTL YYGEYRNTGA GAETKGRVTW 540 TGVHTSLSTA DATGFTVEKF IMGNSWLGAT GVGYTSGL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02468 | PLN02468 | 2.0e-112 | 236 | 578 | 343 | + putative pectinesterase/pectinesterase inhibitor |
| PLN02713 | PLN02713 | 7.0e-114 | 173 | 578 | 445 | + Probable pectinesterase/pectinesterase inhibitor |
| PLN02301 | PLN02301 | 2.0e-125 | 135 | 578 | 458 | + pectinesterase/pectinesterase inhibitor |
| PLN02170 | PLN02170 | 2.0e-138 | 79 | 578 | 503 | + probable pectinesterase/pectinesterase inhibitor |
| pfam01095 | Pectinesterase | 1.0e-141 | 258 | 564 | 311 | + Pectinesterase. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD19539.1 | 0 | 1 | 578 | 1 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
| RefSeq | NP_001048322.1 | 0 | 1 | 578 | 11 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148248.1 | 0 | 56 | 578 | 58 | 578 | pectinesterase-2 [Zea mays] |
| RefSeq | XP_002449226.1 | 0 | 27 | 564 | 1 | 570 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
| RefSeq | XP_002454668.1 | 0 | 1 | 578 | 1 | 575 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 255 | 578 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 255 | 578 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-16 | 256 | 532 | 3 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-16 | 256 | 532 | 3 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-16 | 256 | 532 | 3 | 311 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
