Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069478m |
Family | CE8 |
Protein Properties | Length: 553 Molecular Weight: 57140.1 Isoelectric Point: 7.191 |
Chromosome | Chromosome/Scaffold: 008354 Start: 3238 End: 4967 |
Description | pectin methylesterase 61 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 235 | 535 | 0 |
AVVALDGRGMHKSINDAVADVTAARSRASGGHGEGASRRVVLHVKAGRYVETVRVPNANVMLVGDGKGKTILDGRKSAGDGYTTYNSATVVVLGAGFIGK GLSIINSAGPGKGQAVALVVSGDRSALYQCEIQAYQDTLYAHANRQFYAQTDVSGTVDFIFGNAAVVFQNCGIRARKPITGQRDTITAQGRYDLNQNTGI TLQKCQIAGAPDLGSTPVYLGRPWRKFARVGVMESDLDGSIAAAGWLEWSEPSALSTLFYGEFANTGPGAATNGRVAWNGVHASMSVAEATEFTVKKLIE G |
Full Sequence |
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Protein Sequence Length: 553 Download |
MAMVLALAAP AAATSTAKGE SEATSTGTAG AVSRIATSSA APPTRQKQNV TLICQSTPYP 60 SACETALSSA EARSAADPFA ASVQFAIARA TAAHALARNL SASTPTDPPS GMRDCVELLD 120 ITLHQLGDAL AGSASDAQGA RTWLSAAMTY QDTCNESLAA VPASAGRDAV RRQVGALAQF 180 IGTALALHVS RMEGRSGAAP APAPSPEGIT TFPSWLSERD RRLLESPVAN ITPDAVVALD 240 GRGMHKSIND AVADVTAARS RASGGHGEGA SRRVVLHVKA GRYVETVRVP NANVMLVGDG 300 KGKTILDGRK SAGDGYTTYN SATVVVLGAG FIGKGLSIIN SAGPGKGQAV ALVVSGDRSA 360 LYQCEIQAYQ DTLYAHANRQ FYAQTDVSGT VDFIFGNAAV VFQNCGIRAR KPITGQRDTI 420 TAQGRYDLNQ NTGITLQKCQ IAGAPDLGST PVYLGRPWRK FARVGVMESD LDGSIAAAGW 480 LEWSEPSALS TLFYGEFANT GPGAATNGRV AWNGVHASMS VAEATEFTVK KLIEGDTWLG 540 DTGVPYASGL FE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 5.0e-132 | 37 | 550 | 543 | + pectinesterase | ||
PLN02484 | PLN02484 | 4.0e-135 | 21 | 550 | 556 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-138 | 110 | 550 | 452 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 4.0e-149 | 234 | 536 | 309 | + Pectinesterase. | ||
PLN02170 | PLN02170 | 5.0e-151 | 55 | 550 | 501 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19539.1 | 0 | 1 | 550 | 19 | 571 | putative pectinesterase [Oryza sativa Japonica Group] |
RefSeq | NP_001048322.1 | 0 | 1 | 550 | 29 | 581 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148248.1 | 0 | 31 | 550 | 58 | 578 | pectinesterase-2 [Zea mays] |
RefSeq | XP_002449226.1 | 0 | 1 | 535 | 1 | 569 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
RefSeq | XP_002454668.1 | 0 | 49 | 550 | 56 | 575 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 229 | 550 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 231 | 552 | 1 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-16 | 232 | 459 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-16 | 232 | 459 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-16 | 232 | 459 | 3 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777316 | 453 | 110 | 550 | 0 |
HO778758 | 455 | 112 | 550 | 0 |
ES437220 | 254 | 212 | 463 | 0 |
DT740901 | 278 | 275 | 550 | 0 |
ES850416 | 342 | 212 | 546 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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