| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00069505m |
| Family | GT30 |
| Protein Properties | Length: 465 Molecular Weight: 51111.8 Isoelectric Point: 8.4166 |
| Chromosome | Chromosome/Scaffold: 008512 Start: 8398 End: 12892 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 47 | 230 | 0 |
| RWPERLGRPSAARPRPGSPLVWFHAVSLGEGMAALPVVRHCARLHPGLPLPLTVASSISENCEVIKDLLPDGVIYQFAPLDCPDAIDNFIGYWKPSLVLL MESELWPNLIMSAAEKGIAVALLNARMSLKSFNRWSMPLGLPLVTLMLSKLSLVAPLSTIQAVRFQLLHTPPGIIHFAGDLKYA | |||
| Full Sequence |
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| Protein Sequence Length: 465 Download |
| MCPACAPAPA AARGGLALYE LYRAASRAAA PAVLLWRRLQ GLEHPTRWPE RLGRPSAARP 60 RPGSPLVWFH AVSLGEGMAA LPVVRHCARL HPGLPLPLTV ASSISENCEV IKDLLPDGVI 120 YQFAPLDCPD AIDNFIGYWK PSLVLLMESE LWPNLIMSAA EKGIAVALLN ARMSLKSFNR 180 WSMPLGLPLV TLMLSKLSLV APLSTIQAVR FQLLHTPPGI IHFAGDLKYA VGDVNVGENE 240 VNKINDLRKQ FSNRPLWMAA SIHRGEEQVI LRVHEELIKM YPTLLLILVP RHPQDCKNFS 300 LALKKQEVNF VLRSTKEVVS SGTRVYMVDT LDLCTSPSER ELRMLYRVTP VAVIGSSFLP 360 GLAGHNISEA AAAGCAVVTG PHVGHFYHML LDMWQINPLA VKQVAGEFEL LQALKELLGD 420 AETLGACQRA AKDAFSIMSH GVVNRVWNLV CRFAIDFRID TWNS* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam04413 | Glycos_transf_N | 3.0e-46 | 44 | 230 | 187 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. |
| COG1519 | KdtA | 3.0e-82 | 36 | 450 | 419 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] |
| PRK05749 | PRK05749 | 7.0e-90 | 36 | 453 | 422 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN31913.1 | 0 | 7 | 464 | 3 | 450 | unknown [Zea mays] |
| GenBank | EEC71834.1 | 0 | 1 | 464 | 1 | 453 | hypothetical protein OsI_04493 [Oryza sativa Indica Group] |
| RefSeq | XP_002322900.1 | 0 | 12 | 450 | 5 | 433 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458792.1 | 0 | 1 | 464 | 1 | 453 | hypothetical protein SORBIDRAFT_03g040370 [Sorghum bicolor] |
| RefSeq | XP_002528642.1 | 0 | 8 | 448 | 3 | 433 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 5e-19 | 67 | 430 | 43 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2xcu_C | 5e-19 | 67 | 430 | 43 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2xcu_B | 5e-19 | 67 | 430 | 43 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2xcu_A | 5e-19 | 67 | 430 | 43 | 356 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2xci_D | 5e-19 | 67 | 430 | 43 | 356 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV503346 | 246 | 220 | 465 | 0 |
| CB675948 | 252 | 36 | 287 | 0 |
| FL964789 | 239 | 109 | 347 | 0 |
| FE616521 | 225 | 140 | 363 | 0 |
| FE616521 | 25 | 364 | 388 | 2.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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