| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00069653m |
| Family | GH2 |
| Protein Properties | Length: 884 Molecular Weight: 99007.9 Isoelectric Point: 6.2113 |
| Chromosome | Chromosome/Scaffold: 008784 Start: 7035 End: 12397 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 67 | 749 | 0 |
| LSIEAALYDNCGLSDSLDADLSSANVVNLKPKPKATRRHCLGFHGYVLGGKIENPKLWSSEHPNLYTLVVLLKDAKGKLIECESCQVGIRNVVLAHKQML VNGCPVVLRGVNRHEHHPRLGKTNIEACMIKDLILMRQNNINAVRNSHYPQHSRWYELCDIFGLYVIDEANIETHGFDENSNFKHPTLEPIWANAMLDRV VGMVERDKNHACIIVWSLGNESSYGPNHASMSGWIRERDPTRLLHYEGGGSRTSSTDIVCPMYMRVWDIIKIAKDPSETRPLILCEYSHAMGNSNGNIDA YWMAIDNTFGLQGGFIWDWVDQGLLKEDSDGSKFWAYGGDFGDTPNDSNFCLNGIVWPDRTIHPAVHEVKYLYQPIKISAADNMLKIENGHFFETTDALD FSWVLQGDGCILGSGSLNVPTLAPQTSHLINMESSPWFSLWTTYAAKEVFLSVNVKQRYQTQWAKDGHLLASAQLCLPQKNGFVPHAIAFSSSPLACERT GDSVIISKNNAWEIKVNSRLGTIDSWKVNGVELMSKGIFPCFWRAPTDNDKGGFYTKPYVSRWREASLDNVSFYSSHFSVKELLDNTVELSTVYYGLPGN LPKPDDAALSQAPESTLFQVNMLCRIYESGDVVLEYEVNPKADLPPLPRVGVVFNTEKSLSHVTWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 884 Download |
| MEERRKPLPM ELEREAVSDR IHSKRSEPSD GKSDGRHGRA TWPAEGQEVV EVEIDSHKQD 60 REHVSTLSIE AALYDNCGLS DSLDADLSSA NVVNLKPKPK ATRRHCLGFH GYVLGGKIEN 120 PKLWSSEHPN LYTLVVLLKD AKGKLIECES CQVGIRNVVL AHKQMLVNGC PVVLRGVNRH 180 EHHPRLGKTN IEACMIKDLI LMRQNNINAV RNSHYPQHSR WYELCDIFGL YVIDEANIET 240 HGFDENSNFK HPTLEPIWAN AMLDRVVGMV ERDKNHACII VWSLGNESSY GPNHASMSGW 300 IRERDPTRLL HYEGGGSRTS STDIVCPMYM RVWDIIKIAK DPSETRPLIL CEYSHAMGNS 360 NGNIDAYWMA IDNTFGLQGG FIWDWVDQGL LKEDSDGSKF WAYGGDFGDT PNDSNFCLNG 420 IVWPDRTIHP AVHEVKYLYQ PIKISAADNM LKIENGHFFE TTDALDFSWV LQGDGCILGS 480 GSLNVPTLAP QTSHLINMES SPWFSLWTTY AAKEVFLSVN VKQRYQTQWA KDGHLLASAQ 540 LCLPQKNGFV PHAIAFSSSP LACERTGDSV IISKNNAWEI KVNSRLGTID SWKVNGVELM 600 SKGIFPCFWR APTDNDKGGF YTKPYVSRWR EASLDNVSFY SSHFSVKELL DNTVELSTVY 660 YGLPGNLPKP DDAALSQAPE STLFQVNMLC RIYESGDVVL EYEVNPKADL PPLPRVGVVF 720 NTEKSLSHVT WYGRGPFECY PDRKAAAHVG VYESSVDDLH VPYIAPVECG GRADVRWMAL 780 RNADGLGLYA SVHGESPPMQ MSASYYGTAE LDQATHVHKL VKGDDIEVHL DHKHMGLGGD 840 DSWSPCVHEQ YLLPPTRYAF SMRLCPLLPS SSCHDIYKSQ LPK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 4.0e-89 | 574 | 864 | 292 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| COG3250 | LacZ | 4.0e-107 | 117 | 747 | 642 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| pfam02836 | Glyco_hydro_2_C | 5.0e-115 | 158 | 444 | 297 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK09525 | lacZ | 0 | 118 | 866 | 768 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 117 | 851 | 747 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC72176.1 | 0 | 50 | 882 | 236 | 1031 | hypothetical protein OsI_05227 [Oryza sativa Indica Group] |
| RefSeq | NP_001045421.1 | 0 | 50 | 882 | 284 | 1116 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002266400.1 | 0 | 50 | 881 | 283 | 1112 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 50 | 881 | 283 | 1113 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002513059.1 | 0 | 44 | 880 | 277 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3muy_4 | 0 | 118 | 865 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_3 | 0 | 118 | 865 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_2 | 0 | 118 | 865 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_1 | 0 | 118 | 865 | 295 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 1jz7_D | 0 | 118 | 865 | 295 | 1021 | A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL727074 | 272 | 236 | 507 | 0 |
| FL769129 | 261 | 236 | 496 | 0 |
| FL705689 | 260 | 303 | 562 | 0 |
| FL823757 | 261 | 229 | 489 | 0 |
| EG397069 | 272 | 167 | 438 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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