y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069857m |
Family | GT47 |
Protein Properties | Length: 503 Molecular Weight: 56654.4 Isoelectric Point: 8.586 |
Chromosome | Chromosome/Scaffold: 0101078 Start: 1 End: 3496 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 167 | 453 | 0 |
RLLKVFIYHDGAKPIFHSPELKGIYASEGWFMKLMEANQNFVVRDPNRAHLFYLPYSSRQLEHNLYVPGSNSIEPLSIFIKNYIDMISAKYPYWNRTKGA DHFFVACHDWGPYTTKLHDELRKNTIKALCNADLSEGIFIRGKDVSLPETFLRAPRRPLRDIGGRPVAQRTILAFFAGQMHGRVRPVLLKCWGDKDADMR IYSRLPHRITRRRNYVQHMKSSKYCICPMGYEVNSPRIVEAIYYECVPVIIADNFVLPFDDALNWSAFSVVVPERDVPKLKEILLAI |
Full Sequence |
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Protein Sequence Length: 503 Download |
SRPRVVAACA AVAALVLLLS AAPAAEDPSR WHSYLVGPLP GGTREETVVA VVGSFAGAAA 60 ASPSAAGAPL SSLGESNLSG EIEPTPAPSM VLVPAPSPAE NFDDGSMEEP ERPEIKAPLW 120 STAADKELIY AKKDITNAPL TLDDPDLYAP LFRNVSMFKR SYELMERLLK VFIYHDGAKP 180 IFHSPELKGI YASEGWFMKL MEANQNFVVR DPNRAHLFYL PYSSRQLEHN LYVPGSNSIE 240 PLSIFIKNYI DMISAKYPYW NRTKGADHFF VACHDWGPYT TKLHDELRKN TIKALCNADL 300 SEGIFIRGKD VSLPETFLRA PRRPLRDIGG RPVAQRTILA FFAGQMHGRV RPVLLKCWGD 360 KDADMRIYSR LPHRITRRRN YVQHMKSSKY CICPMGYEVN SPRIVEAIYY ECVPVIIADN 420 FVLPFDDALN WSAFSVVVPE RDVPKLKEIL LAIPKSQYIT LQSNVKRVQK HFLWHPNPIK 480 YDIFHMILHS VWFSRVNQMQ ID* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-68 | 165 | 453 | 305 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23466.1 | 0 | 119 | 501 | 153 | 535 | unnamed protein product [Vitis vinifera] |
GenBank | EEC69788.1 | 0 | 23 | 502 | 37 | 536 | hypothetical protein OsI_00072 [Oryza sativa Indica Group] |
RefSeq | NP_001041784.1 | 0 | 23 | 502 | 37 | 550 | Os01g0107700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002269459.1 | 0 | 119 | 502 | 153 | 536 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002457517.1 | 0 | 26 | 500 | 45 | 521 | hypothetical protein SORBIDRAFT_03g008610 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |