Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069874m |
Family | GH17 |
Protein Properties | Length: 380 Molecular Weight: 40912 Isoelectric Point: 9.4579 |
Chromosome | Chromosome/Scaffold: 0100218 Start: 2512 End: 3676 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 50 | 353 | 0 |
LGVCYGMSGSDLPPASTVVRMFKSNGIKAMRLYAPDKAALEALNGTSIGVLVGAPNDVLSNLTSKKAAASWVRDNIQAYPSVKFLYIAVGNEVAGKPADL LAPAMENVHAALAAAKLGHIQVTTSVSQAIVGVCNQPSAANFTKEAQVFMGPVLKFLACTGAPLMANIYPYFTYAYNPGDMDIRYALFTAPATVVKDGKY NYQNLFDTTIDAFYEAMSKLGVSNVSVLVSETGWPTGGGKAATPENAKVYNENLIKHIRGGTPRHPDAIKTYLFSMFNENQKPKGVEQNWGLFYPNKKPV YKIS |
Full Sequence |
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Protein Sequence Length: 380 Download |
AIGKKRMQIC GRYMNRHCTS FHVSNAFKTF TIMISMYRRA RLISEGVDSL GVCYGMSGSD 60 LPPASTVVRM FKSNGIKAMR LYAPDKAALE ALNGTSIGVL VGAPNDVLSN LTSKKAAASW 120 VRDNIQAYPS VKFLYIAVGN EVAGKPADLL APAMENVHAA LAAAKLGHIQ VTTSVSQAIV 180 GVCNQPSAAN FTKEAQVFMG PVLKFLACTG APLMANIYPY FTYAYNPGDM DIRYALFTAP 240 ATVVKDGKYN YQNLFDTTID AFYEAMSKLG VSNVSVLVSE TGWPTGGGKA ATPENAKVYN 300 ENLIKHIRGG TPRHPDAIKT YLFSMFNENQ KPKGVEQNWG LFYPNKKPVY KISLDVTPDP 360 DSPAPAPGPE SPAAAPHSY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-8 | 79 | 346 | 284 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 1.0e-130 | 50 | 353 | 310 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PRF/SEQDB | 0 | 35 | 354 | 8 | 334 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
GenBank | AAK16694.1 | 0 | 43 | 354 | 22 | 334 | AF323610_1 glucanase [Oryza sativa] |
GenBank | AAV37460.1 | 0 | 43 | 354 | 22 | 334 | endo-1,3;1,4-beta-glucanase [Oryza sativa Japonica Group] |
EMBL | CAA41685.1 | 0 | 43 | 354 | 22 | 334 | beta-glucanase [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001055377.1 | 0 | 43 | 354 | 22 | 334 | Os05g0375400 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 50 | 354 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 50 | 354 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 50 | 354 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 50 | 354 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 50 | 354 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CB673940 | 277 | 48 | 323 | 0 |
CB670461 | 268 | 48 | 314 | 0 |
CB654106 | 258 | 98 | 354 | 0 |
CB644222 | 257 | 99 | 354 | 0 |
CB675983 | 262 | 54 | 314 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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