Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00069992m |
Family | CBM53 |
Protein Properties | Length: 1140 Molecular Weight: 130124 Isoelectric Point: 4.6005 |
Chromosome | Chromosome/Scaffold: 010078 Start: 3912 End: 10308 |
Description | starch synthase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 620 | 703 | 9.6e-32 |
STIALYFNRDLSAIANEPDVLIKGAFNGWKWRFFTEKLHKSELGGDWWSCKLYIPKQAYRFDFVFFNGRTMYENNGKNDFVIQI | |||
CBM53 | 956 | 1044 | 2.8e-32 |
GTTVDVLYNPSNTVLNGKPEVWFRCSFNCWMHPGGVLPPQKMVKAEHGSHLKAIVNVPQDAYIMDFVFSESEEGGIFDNRNGLDYHIPV | |||
CBM53 | 795 | 882 | 1.9e-35 |
ATVRVYYNRHSRPLIHSAEIWMHGGYNNWIDGLSFAERLVHHDDKDGDWWYADVVLPQRAYVLDWVFADGPPGNARIYDNNGRQDFHS |
Full Sequence |
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Protein Sequence Length: 1140 Download |
MEMALLPQSP LCSRNQPTLM LQPTTLGGGP DQSFLRTSRF ARSRIIRCRV ASSDFPSRKS 60 RKMVYPKVKV AAFRGYVPRL PAESSTKKSI HHNSDERTIG TFNRLLSTDT DESTSSRDLD 120 TAEVDLLEDA SSNLASGEVD VAEEGSLDMF EVDLSRNALI NISLGVEEEE VDEAAVEKDK 180 FDIDSTRVQF GSAAVQELDP KDEAKAKEDI FVAVESSEEI SEVDNDQWQH PALPSTSMED 240 KANNETHESL GPEPRTVVRV KEQDKLDFSV DEGSAFDTQE EDQQVVDYDW QEQNVTTFDE 300 QEQDQCIIGC RRQDKSIVGV PEQNQSVVVY SKPDQSIVAS HRKDESVAAV PEKIQSVVGY 360 KKPDQSIVAS HKEDQSIVSV PEQIKSIVGY SKAEQSIIGL HKQQQSVVHI PQEKQSIVGF 420 HKQDLSTFSS SKESQTKKLD IPESRDALRT EEIEAKAGDY TPQKTDEDKL HAKSDVDLLQ 480 KHKEDFTEEA PEMINSKKIN EEHLAMVEEK KSISMGEEQW IVTDESISVV EVEMETGEDK 540 SLHLPGEEDP WVEDEVGISE DEEHYEVEET FVSPEQDMQE SPQDEMDPQE LQRMLRELAE 600 KNYLLGNKFF VFPEVLKADS TIALYFNRDL SAIANEPDVL IKGAFNGWKW RFFTEKLHKS 660 ELGGDWWSCK LYIPKQAYRF DFVFFNGRTM YENNGKNDFV IQIESTMDEH SFADFLVEAK 720 QRELERFAIE ETERKKQTEE EKRMKEERAA HEAAMAQAKA EIVTKKNKLQ NVLDSAKGSV 780 DNLWYIEPIS TVQEATVRVY YNRHSRPLIH SAEIWMHGGY NNWIDGLSFA ERLVHHDDKD 840 GDWWYADVVL PQRAYVLDWV FADGPPGNAR IYDNNGRQDF HSILPSNMTE EEYWAEEEQR 900 IYTRLQQERR EREEAIRMKA ERRAKLKAEM KEKTMRMFLV SQKHIVYTEP LEIRAGTTVD 960 VLYNPSNTVL NGKPEVWFRC SFNCWMHPGG VLPPQKMVKA EHGSHLKAIV NVPQDAYIMD 1020 FVFSESEEGG IFDNRNGLDY HIPVFGSIAK EPPMHIVHIA VEMAPIAKVG GLGDVVTSLS 1080 RAVQDLGHNV EVILPKHDCL NLSNVKNLHI HQSFSWGGSE IKVWRGHVED LCVYFLEPQN 1140 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 0.0005 | 63 | 166 | 105 | + synthase/transferase | ||
pfam03423 | CBM_25 | 1.0e-28 | 956 | 1044 | 89 | + Carbohydrate binding domain (family 25). | ||
pfam03423 | CBM_25 | 8.0e-31 | 619 | 704 | 87 | + Carbohydrate binding domain (family 25). | ||
pfam03423 | CBM_25 | 1.0e-33 | 796 | 885 | 90 | + Carbohydrate binding domain (family 25). | ||
PLN02316 | PLN02316 | 0 | 517 | 1140 | 641 | + synthase/transferase |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF88000.1 | 0 | 1 | 1140 | 1 | 1249 | starch synthase III [Aegilops tauschii] |
GenBank | ACC86846.1 | 0 | 1 | 1140 | 1 | 1322 | starch synthase IIIa precursor [Sorghum bicolor] |
RefSeq | NP_001104881.1 | 0 | 1 | 443 | 1 | 526 | starch synthase DULL1 [Zea mays] |
RefSeq | NP_001104881.1 | 0 | 302 | 1140 | 476 | 1312 | starch synthase DULL1 [Zea mays] |
RefSeq | XP_002443985.1 | 0 | 1 | 1140 | 1 | 1302 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 556 | 585 | 1140 | 0 |
FL797194 | 208 | 933 | 1140 | 0 |
GO857817 | 258 | 883 | 1140 | 0 |
GO857817 | 111 | 785 | 893 | 0.002 |
FL797194 | 99 | 785 | 881 | 0.003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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