Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00070694m |
Family | CBM22 |
Protein Properties | Length: 853 Molecular Weight: 95725.1 Isoelectric Point: 7.7791 |
Chromosome | Chromosome/Scaffold: 033039 Start: 10 End: 4384 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 355 | 488 | 5.6e-29 |
VIKNPHFEDGLKNWSGRGCNICRHELAAYGNVRPLNGSYFASATGRVHNWHGIQQEITGRVQRKVLYEINSTVRIFGSANDTEVRVTLWVQEYGRERYVG LAKNQASDKQWKHLKGRFLLHAPFTKAVIFIEGP | |||
CBM22 | 185 | 322 | 1.4e-30 |
IISNYDFSKGLHPWNPICCHAYVASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNRVSTGTVYVVSAFVRVDGNVQGQVEVKGTLRLQNTDGST HYNPVGSVLASKEKWNKLEGSFSLTNMPKHVVFYLEGP | |||
CBM22 | 15 | 153 | 1.3e-30 |
NIVSNGDFSEGLHLWQPNSCHAFVAVEGSGYHYGVRPHSGSSYAVLTYRTQSWQGLEQDITENVTLGTEYFITAYVRVHGEVHEPVGVKATLKFEEESSS TNYVSIARISASQECWEKMEGSFNLTTIPRRLVFYLEGP | |||
GH10 | 721 | 846 | 3.1e-33 |
QTENSFPFGSCIAKHNIANEDFAEFFLKNFNWAVFENELKWYHTEAEQGRLNYKDSDELLEFCEKHKIQVRGHCLFWEVEDAVQPWVRSLQGHHLMAAVQ NRLQSLLSRYKGRFRHHDVNNEMLHG | |||
CBM22 | 523 | 663 | 2.2e-37 |
NLLHNSAFTCGLAGWSPMGSCRLSIQTEAPHMLPSILKDRASQKHISGRHILATNRTEVWMGPSQVITDKLRLHVTYRVSAWVRTGSGGHGRHNVNVCLA VDNQWVNGGQVEADGDQWYEIKGAFKLEKQPSKVTAYVQGP |
Full Sequence |
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Protein Sequence Length: 853 Download |
VVDKCGASNE VIMENIVSNG DFSEGLHLWQ PNSCHAFVAV EGSGYHYGVR PHSGSSYAVL 60 TYRTQSWQGL EQDITENVTL GTEYFITAYV RVHGEVHEPV GVKATLKFEE ESSSTNYVSI 120 ARISASQECW EKMEGSFNLT TIPRRLVFYL EGPPPGVDLL IDSVAISYKK TEKSVSSTIG 180 RTEGIISNYD FSKGLHPWNP ICCHAYVASQ WSGFLDGIRG NSGENYAVVS KRTEHWQGLE 240 QDITNRVSTG TVYVVSAFVR VDGNVQGQVE VKGTLRLQNT DGSTHYNPVG SVLASKEKWN 300 KLEGSFSLTN MPKHVVFYLE GPPAGVDLII DSVNISCSGH EQSKEVKVTS GVETVIKNPH 360 FEDGLKNWSG RGCNICRHEL AAYGNVRPLN GSYFASATGR VHNWHGIQQE ITGRVQRKVL 420 YEINSTVRIF GSANDTEVRV TLWVQEYGRE RYVGLAKNQA SDKQWKHLKG RFLLHAPFTK 480 AVIFIEGPPA GIDILVDGLV LSPARKLQAA PCPKIENVLY GVNLLHNSAF TCGLAGWSPM 540 GSCRLSIQTE APHMLPSILK DRASQKHISG RHILATNRTE VWMGPSQVIT DKLRLHVTYR 600 VSAWVRTGSG GHGRHNVNVC LAVDNQWVNG GQVEADGDQW YEIKGAFKLE KQPSKVTAYV 660 QGPPPGVDLR VMDLQIYPVD RKARFEYLKE KTDKVRKRDV VLKFQGSNAV NLLGSSVRIQ 720 QTENSFPFGS CIAKHNIANE DFAEFFLKNF NWAVFENELK WYHTEAEQGR LNYKDSDELL 780 EFCEKHKIQV RGHCLFWEVE DAVQPWVRSL QGHHLMAAVQ NRLQSLLSRY KGRFRHHDVN 840 NEMLHGSFYE DRL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 5.0e-15 | 355 | 490 | 138 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 6.0e-17 | 185 | 324 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 4.0e-17 | 713 | 845 | 136 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 5.0e-23 | 759 | 853 | 106 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 4.0e-31 | 723 | 845 | 126 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ03745.1 | 0 | 2 | 853 | 19 | 870 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
GenBank | EAZ39688.1 | 0 | 2 | 853 | 19 | 870 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
RefSeq | NP_001059561.1 | 0 | 2 | 853 | 38 | 889 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459803.1 | 0 | 2 | 853 | 36 | 886 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
RefSeq | XP_002459803.1 | 0 | 169 | 681 | 34 | 538 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1e0v_A | 0.000000000001 | 728 | 844 | 16 | 130 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 0.000000000001 | 728 | 844 | 16 | 130 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 0.000000000001 | 728 | 844 | 16 | 130 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0l_A | 0.000000000001 | 728 | 844 | 16 | 130 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0k_A | 0.000000000001 | 728 | 844 | 16 | 130 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG785760 | 245 | 606 | 850 | 0 |
EB404048 | 268 | 166 | 433 | 0 |
JG785760 | 46 | 290 | 335 | 0.037 |
JG785760 | 115 | 451 | 550 | 0.3 |
JG785760 | 53 | 114 | 166 | 0.49 |
Sequence Alignments (This image is cropped. Click for full image.) |
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