y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00070697m |
Family | GH14 |
Protein Properties | Length: 233 Molecular Weight: 24340.2 Isoelectric Point: 5.8893 |
Chromosome | Chromosome/Scaffold: 033568 Start: 7 End: 705 |
Description | beta-amylase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 2 | 190 | 1.99965e-42 |
SGQPLWGLSGPHDGPRYDESPESSAFFREPGGSWKSAYGEFFLSWYAGELLAHGDRVLAAASRAFGGKPVELSARVPLLRGSRPAEAAAGLHGGYGPVAE MFARHGCTVIACGVEARLDAPAEEVLARVEAACAEHGARLAAESAPLAVARDGAGSAGVWLSAGRTRPRQFTYQRMGADFFSPGHWPLF |
Full Sequence |
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Protein Sequence Length: 233 Download |
SSGQPLWGLS GPHDGPRYDE SPESSAFFRE PGGSWKSAYG EFFLSWYAGE LLAHGDRVLA 60 AASRAFGGKP VELSARVPLL RGSRPAEAAA GLHGGYGPVA EMFARHGCTV IACGVEARLD 120 APAEEVLARV EAACAEHGAR LAAESAPLAV ARDGAGSAGV WLSAGRTRPR QFTYQRMGAD 180 FFSPGHWPLF VQFVRALECP EEAHADDLPG GERLTVPSAS AAPEGARAVQ TV* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01373 | Glyco_hydro_14 | 2.0e-15 | 7 | 193 | 203 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN02161 | PLN02161 | 2.0e-19 | 3 | 197 | 224 | + beta-amylase | ||
PLN02801 | PLN02801 | 1.0e-22 | 1 | 206 | 235 | + beta-amylase | ||
PLN00197 | PLN00197 | 2.0e-29 | 1 | 204 | 229 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-33 | 1 | 197 | 218 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95933.1 | 0 | 1 | 230 | 287 | 520 | Glycosyl hydrolase family 14 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EAZ41009.1 | 0 | 2 | 207 | 12 | 236 | hypothetical protein OsJ_25494 [Oryza sativa Japonica Group] |
RefSeq | NP_001050116.1 | 0 | 1 | 230 | 459 | 692 | Os03g0351300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151271.1 | 0 | 1 | 232 | 291 | 537 | beta-amylase [Zea mays] |
RefSeq | XP_002467860.1 | 0 | 1 | 231 | 288 | 526 | hypothetical protein SORBIDRAFT_01g035370 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 9e-20 | 2 | 223 | 224 | 469 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1fa2_A | 1e-19 | 1 | 206 | 224 | 446 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 2dqx_A | 2e-19 | 2 | 223 | 224 | 469 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1wdq_A | 2e-19 | 2 | 223 | 224 | 469 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1q6f_A | 2e-19 | 2 | 223 | 224 | 469 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL809538 | 222 | 9 | 230 | 0 |
EC882298 | 230 | 1 | 218 | 0 |
FL890384 | 186 | 1 | 185 | 0 |
FE623151 | 170 | 64 | 233 | 0 |
FL890384 | 25 | 184 | 208 | 0.00000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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