Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00070706m |
Family | GH19 |
Protein Properties | Length: 347 Molecular Weight: 38137.7 Isoelectric Point: 6.772 |
Chromosome | Chromosome/Scaffold: 033544 Start: 4943 End: 7049 |
Description | Chitinase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 90 | 331 | 0 |
ISDYFKAYQFEELFAHRNDAQAHAPGFWDYQAFITAAALFEPSGFGTTGGKQMGMKEVAAFLGHVGAKTSCGYGEAPGGETAWGLCYNHELSPSQSYCDD SNELYPCVEGVEYYGRGAIPVYWNHNYGIIGNGIKQDLLNHPELLEQNATLAFEAAVWRWMTPMKRKQPSAHDVFVGNWKPTKNDTLSKRYPGFGATMNI LYGDDICGQGSTDKMNTIISHYQHYLDLMGVGRQHSGDNLDC |
Full Sequence |
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Protein Sequence Length: 347 Download |
QHSRRPDPFP PPPNHRRLGA SSFRLQQPVS CFVGKARGTC SREPAMARWA ALLLLLLAAS 60 AAGRKEKAGE KVCGKGWECS GSRFCCNETI SDYFKAYQFE ELFAHRNDAQ AHAPGFWDYQ 120 AFITAAALFE PSGFGTTGGK QMGMKEVAAF LGHVGAKTSC GYGEAPGGET AWGLCYNHEL 180 SPSQSYCDDS NELYPCVEGV EYYGRGAIPV YWNHNYGIIG NGIKQDLLNH PELLEQNATL 240 AFEAAVWRWM TPMKRKQPSA HDVFVGNWKP TKNDTLSKRY PGFGATMNIL YGDDICGQGS 300 TDKMNTIISH YQHYLDLMGV GRQHSGDNLD CGDQVAFNPS SESSDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00442 | lysozyme_like | 0.004 | 195 | 257 | 63 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 4.0e-69 | 98 | 331 | 234 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 2.0e-100 | 94 | 331 | 238 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ07679.1 | 0 | 63 | 345 | 27 | 315 | hypothetical protein OsI_29936 [Oryza sativa Indica Group] |
RefSeq | NP_001062281.1 | 0 | 63 | 345 | 27 | 315 | Os08g0522500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001063549.1 | 0 | 64 | 345 | 39 | 320 | Os09g0494200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001142334.1 | 0 | 64 | 345 | 39 | 320 | hypothetical protein LOC100274504 [Zea mays] |
RefSeq | XP_002445877.1 | 0 | 70 | 346 | 26 | 302 | hypothetical protein SORBIDRAFT_07g027310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3cql_B | 0 | 90 | 337 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 90 | 337 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_B | 0 | 89 | 337 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_A | 0 | 89 | 337 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dwx_B | 0 | 89 | 337 | 2 | 243 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO837097 | 282 | 64 | 345 | 0 |
HO809991 | 276 | 67 | 342 | 0 |
HO852027 | 276 | 67 | 342 | 0 |
DT338715 | 282 | 63 | 344 | 0 |
HS090377 | 270 | 71 | 340 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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