Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00070806m |
Family | GH28 |
Protein Properties | Length: 302 Molecular Weight: 32990.5 Isoelectric Point: 4.9731 |
Chromosome | Chromosome/Scaffold: 033390 Start: 3090 End: 4845 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 301 | 0 |
EACNSSDYRSVYLVPEGKTYLLMPVSFCGPCRAISITAMIKGTLEAPSNRSVWLDRNLQEWITFEGIDRLHVLGGGTLNGNGQQWWINSCKLNRSMRCVT GPTAIYFRRCTHLVVEDLEVRDSMQMHVAIAYSWNVLVSKMFIAAPGWSPNTDGIHVSNSKEVSISDCTISTGDDCISIVTGSMFVRVTGIFCGPGHGIS IGSLGANNSWAHVSDVLVEKATLLGTTNGVRIKTW |
Full Sequence |
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Protein Sequence Length: 302 Download |
MWISPSILLP LASLEEVFPE AEGPAAESSD ELWLRSGPPP RVVDVDDYGA RANGCDDTEA 60 FLAAWREACN SSDYRSVYLV PEGKTYLLMP VSFCGPCRAI SITAMIKGTL EAPSNRSVWL 120 DRNLQEWITF EGIDRLHVLG GGTLNGNGQQ WWINSCKLNR SMRCVTGPTA IYFRRCTHLV 180 VEDLEVRDSM QMHVAIAYSW NVLVSKMFIA APGWSPNTDG IHVSNSKEVS ISDCTISTGD 240 DCISIVTGSM FVRVTGIFCG PGHGISIGSL GANNSWAHVS DVLVEKATLL GTTNGVRIKT 300 WQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-56 | 43 | 302 | 262 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-57 | 76 | 302 | 227 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 9.0e-62 | 44 | 302 | 260 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-75 | 28 | 302 | 278 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-84 | 41 | 302 | 263 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53778.1 | 0 | 7 | 302 | 21 | 319 | unknown [Zea mays] |
GenBank | EAZ26072.1 | 0 | 19 | 302 | 39 | 298 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
RefSeq | NP_001049387.1 | 0 | 19 | 302 | 39 | 325 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150245.1 | 0 | 15 | 302 | 29 | 319 | polygalacturonase [Zea mays] |
RefSeq | XP_002468269.1 | 0 | 19 | 302 | 1 | 285 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000002 | 125 | 300 | 56 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000002 | 125 | 300 | 56 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000002 | 125 | 300 | 56 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000002 | 125 | 300 | 56 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000002 | 125 | 300 | 56 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BQ840584 | 223 | 60 | 281 | 0 |
EE041953 | 236 | 15 | 247 | 0 |
EE012525 | 213 | 15 | 224 | 0 |
EC886530 | 212 | 15 | 223 | 0 |
EE170304 | 206 | 15 | 217 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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