Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00070844m |
Family | CE8 |
Protein Properties | Length: 325 Molecular Weight: 34839 Isoelectric Point: 5.3843 |
Chromosome | Chromosome/Scaffold: 033037 Start: 5216 End: 6561 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 31 | 314 | 0 |
IFVNRNGSADFESVQHAVDSVPFGNDQWIRVHVAAGVYNEKVTIPQNKSFILLEGEGRQQTSIEWADHAGGDSSTAASPTFAAYSADFMARDITFKNLYG GDGGLSPAVAALVSGDRSSFYRCGFVGVQDTLGDMGGRHYYEGCYILGAMDFIFGDGQSIFQGCDIRTAPTPVSPGFITAQGRQSEADTSGFVFRGCTVR GDTPAYLGRAWRRYARVIFYRTDMSGVVVGQGWDAWSYKGMEGTLTMVEAGCTGQGSNRTERVPWTKALSDGELAKFVDLSYIS |
Full Sequence |
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Protein Sequence Length: 325 Download |
MALAVALAVL ASMAAVPRGR RDAAATVVRT IFVNRNGSAD FESVQHAVDS VPFGNDQWIR 60 VHVAAGVYNE KVTIPQNKSF ILLEGEGRQQ TSIEWADHAG GDSSTAASPT FAAYSADFMA 120 RDITFKNLYG GDGGLSPAVA ALVSGDRSSF YRCGFVGVQD TLGDMGGRHY YEGCYILGAM 180 DFIFGDGQSI FQGCDIRTAP TPVSPGFITA QGRQSEADTS GFVFRGCTVR GDTPAYLGRA 240 WRRYARVIFY RTDMSGVVVG QGWDAWSYKG MEGTLTMVEA GCTGQGSNRT ERVPWTKALS 300 DGELAKFVDL SYISGDGWLD AQPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-81 | 23 | 319 | 302 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 8.0e-87 | 25 | 319 | 307 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-88 | 29 | 321 | 304 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-98 | 23 | 323 | 309 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-118 | 29 | 323 | 303 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 29 | 323 | 43 | 341 | unnamed protein product [Vitis vinifera] |
GenBank | EAY73651.1 | 0 | 24 | 324 | 35 | 335 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002263748.1 | 0 | 7 | 323 | 8 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 31 | 323 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002455508.1 | 0 | 12 | 324 | 24 | 338 | hypothetical protein SORBIDRAFT_03g012410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 24 | 321 | 2 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-33 | 27 | 319 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-19 | 41 | 273 | 18 | 289 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-19 | 41 | 273 | 18 | 289 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-19 | 41 | 273 | 18 | 289 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |