| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.001G135100.1 |
| Family | GH28 |
| Protein Properties | Length: 460 Molecular Weight: 50773.4 Isoelectric Point: 6.1889 |
| Chromosome | Chromosome/Scaffold: 01 Start: 37991903 End: 37994564 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 98 | 432 | 0 |
| VVCSSGEAILVVPEENYLLKPIRFSGPCKPNIEVQISGTLEASDDPSDYKEDSSHWLVFENIKKLFVYGGGTIDGNGKIWWKNSCKRNKKRPCKDAPTAL TFDNCEDLIVENLNIENAQQMHVSFQDSENVKVSGLNVIAPEDSPNTDGIHVTNTQNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLG AGKSKEIVSGILVNGAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMENVTNPIIINQNYCDKKKKPCKKRLLQKSAIQIKNVLYQNITGTSSSDIAVKF DCSEKFPCQEIKLQNIDLKCEDGDDAEAWCNNVEL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 460 Download |
| MALLKHLLLS LPIFIISFVF CHATLQEDPL TSIYVHHSPS TDNGGTLFKN FNKQSINLLS 60 LNRLEKRSSL RKVNVNDYGA EGSGDTDDSE AFKKAWDVVC SSGEAILVVP EENYLLKPIR 120 FSGPCKPNIE VQISGTLEAS DDPSDYKEDS SHWLVFENIK KLFVYGGGTI DGNGKIWWKN 180 SCKRNKKRPC KDAPTALTFD NCEDLIVENL NIENAQQMHV SFQDSENVKV SGLNVIAPED 240 SPNTDGIHVT NTQNIQISDS VIGTGDDCIS IVHGSKNVEA TNITCGPGHG ISIGSLGAGK 300 SKEIVSGILV NGAKIFGTKN GVRIKTWQGG SGSASDIQFQ NIEMENVTNP IIINQNYCDK 360 KKKPCKKRLL QKSAIQIKNV LYQNITGTSS SDIAVKFDCS EKFPCQEIKL QNIDLKCEDG 420 DDAEAWCNNV ELSYLGHVKP RCNSENIFTT FWKYFSWYI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-88 | 46 | 430 | 391 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 9.0e-105 | 66 | 441 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-121 | 100 | 433 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-137 | 60 | 440 | 384 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-149 | 67 | 443 | 384 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL30418.1 | 0 | 1 | 442 | 1 | 427 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
| EMBL | CBI29907.1 | 0 | 1 | 442 | 1 | 441 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002308956.1 | 0 | 13 | 442 | 1 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 1 | 443 | 1 | 453 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 34 | 442 | 65 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-24 | 164 | 361 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-20 | 167 | 418 | 77 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 167 | 418 | 77 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 167 | 418 | 77 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 167 | 418 | 77 | 328 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
