| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.001G138000.1 |
| Family | GH28 |
| Protein Properties | Length: 466 Molecular Weight: 51440.1 Isoelectric Point: 5.8458 |
| Chromosome | Chromosome/Scaffold: 01 Start: 38523612 End: 38527029 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 69 | 385 | 0 |
| APGKYLTATVFLKSGVVLVVEPGATILGGSRLEDYPKESLRWYVAVAENATDVGIRGGGVVDGQASKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGF IGCNNVEVSNITLNHPAYWCLHLVRSNNISIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSYTGPVHNLTVTDCWIRSKSSAIKLGS ASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRNSASKEASISDVFFINITANSENGIFLSGSKRGL LRNLRFINMDVTYRRFT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 466 Download |
| MNNQLIFLLF FLLTQSLLAT SSPPNPILIT LSVADFGAAG DASSYDTEPI QSAINSCPEG 60 GPCHVIFPAP GKYLTATVFL KSGVVLVVEP GATILGGSRL EDYPKESLRW YVAVAENATD 120 VGIRGGGVVD GQASKFVVRE DPRKNVMVSW NQTGACLGDE CRPRLIGFIG CNNVEVSNIT 180 LNHPAYWCLH LVRSNNISIK DIAINGDFNI PNNDGIDIED SNNTVITRCH IDTGDDAICP 240 KSYTGPVHNL TVTDCWIRSK SSAIKLGSAS WFDFKHFVFD NITIVDSHRG IGFQIRDGGN 300 VSDIVFSNIN ISTRYYDPLW WGRAEPIYVT SCPRNSASKE ASISDVFFIN ITANSENGIF 360 LSGSKRGLLR NLRFINMDVT YRRFTNYAGG LLDYRPGCQE LVKHRTAGIM MEHIEGLEVK 420 NVEIRWSNNQ LEQWNNPLEF KPSTVNNISF LNFSSGFYTD SKSNY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-9 | 163 | 238 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-9 | 30 | 366 | 358 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-10 | 150 | 255 | 106 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-13 | 149 | 381 | 255 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-40 | 31 | 309 | 313 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 29 | 459 | 33 | 472 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 29 | 459 | 33 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 6 | 456 | 10 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 6 | 456 | 10 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 24 | 458 | 6 | 442 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 6e-17 | 31 | 306 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 6e-17 | 31 | 306 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 6e-17 | 31 | 306 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 6e-17 | 31 | 306 | 28 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000002 | 31 | 273 | 157 | 449 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
