Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G180800.1 |
Family | PL1 |
Protein Properties | Length: 467 Molecular Weight: 51593.3 Isoelectric Point: 5.8224 |
Chromosome | Chromosome/Scaffold: 01 Start: 44519548 End: 44522188 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 337 | 0 |
LWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLS RCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYM A |
Full Sequence |
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Protein Sequence Length: 467 Download |
MLQTTCIFLL SLLSSFSPLG TAMLNLTLPG AHPDPEAVAH EVHRKVNASM ARREMLSVSE 60 RDESSCLTGN PIDDCWKCDP DWPNNRQRLA DCVIGFGQYA KGGKGGEFYV VTDSSDKDPV 120 NPKPGTLRYA VIQNEPLWIV FPSNMMIKLS QELIFNSYKT IDGRGADVHI VGGGCITLQY 180 ISNVIIHNIH IHHCHPSGNT NVRSSPEHYG FRTESDGDGI SIFGSKDIWI DHCTLSRCKD 240 GLIDAVMGST GITISNNYLS HHNEVMLLGH SDDYLPDSGM QVTIAFNHFG EKLVQRMPRC 300 RRGYIHVVNN DFTEWEMYAI GGSGEPTINS QGNRYMAPQN PFAKEVTKRV ETQQSKWKGW 360 NWRSEGDILL NGAFFVASGE GLEVKYEKAY SVEPKSADRI SLLTMSSGVL GNARDNNLGM 420 WSRGPGDEST ESGMVYTDEM STTAPFDLPS LFLLLLSSTI LLTVIL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-23 | 157 | 350 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-60 | 151 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-70 | 144 | 338 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 465 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 22 | 465 | 4 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 465 | 2 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 421 | 115 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 1 | 424 | 1 | 425 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 102 | 337 | 23 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000006 | 160 | 310 | 135 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000002 | 160 | 408 | 90 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |