Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G210300.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52054.5 Isoelectric Point: 4.8387 |
Chromosome | Chromosome/Scaffold: 01 Start: 47399941 End: 47403831 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 437 | 0 |
ADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATILASQDYSHWDVLDSLPSYGRGIGRYRSLIYGQSLSDVVVTGDNGTINGQGSIWWTLFSSHSLNY SRPNLVEFVDSVDVIISNLTFVDAPAWGIHPVYCSNVQIQNITSRAPPESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDEYGIAYGKPTSSVHI SNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTRGRGGYMKGIFISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVGSITFKNVM GANIDVAGNVSGIAESPFSTICLSNVTFFLSYELSPSWFCSNV |
Full Sequence |
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Protein Sequence Length: 483 Download |
MQLFLHWFQN FVDSLQFQLV AAQAHMKGLV AVLLVVAICT AVESNGEENG GTCKRNALNA 60 RPHSVSILEF GAVGDGMTLN TVAFQNAIFY LKSFADKGGA QLYVPSGTWL TGSFNLTSHL 120 TLFLERGATI LASQDYSHWD VLDSLPSYGR GIGRYRSLIY GQSLSDVVVT GDNGTINGQG 180 SIWWTLFSSH SLNYSRPNLV EFVDSVDVII SNLTFVDAPA WGIHPVYCSN VQIQNITSRA 240 PPESPYTSGI VPDSSKYVCI ENSNISTGHD AIVLKSGWDE YGIAYGKPTS SVHISNVYLQ 300 SSSGAGLAFG SEMSGGISDI IAEKLHILNS PIGIELKTTR GRGGYMKGIF ISDAELENIH 360 LGISMTGYSG FHPDDKYDTS ALPVVGSITF KNVMGANIDV AGNVSGIAES PFSTICLSNV 420 TFFLSYELSP SWFCSNVIGF SEKVIPEPCP DLQSSYSKYS FSCFTSLYPQ FSNVSGSSDQ 480 EL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-19 | 26 | 449 | 447 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-22 | 63 | 466 | 423 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-23 | 62 | 420 | 379 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-24 | 165 | 395 | 237 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-53 | 65 | 359 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 41 | 450 | 14 | 428 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 41 | 467 | 37 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 41 | 467 | 102 | 532 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 41 | 450 | 16 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516982.1 | 0 | 46 | 467 | 19 | 443 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-40 | 63 | 419 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-40 | 63 | 419 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-40 | 63 | 419 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-40 | 63 | 419 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000004 | 109 | 393 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |