| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.001G210300.2 |
| Family | GH28 |
| Protein Properties | Length: 407 Molecular Weight: 43902.1 Isoelectric Point: 4.6725 |
| Chromosome | Chromosome/Scaffold: 01 Start: 47400251 End: 47403831 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 19 | 361 | 0 |
| ADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATILASQDYSHWDVLDSLPSYGRGIGRYRSLIYGQSLSDVVVTGDNGTINGQGSIWWTLFSSHSLNY SRPNLVEFVDSVDVIISNLTFVDAPAWGIHPVYCSNVQIQNITSRAPPESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDEYGIAYGKPTSSVHI SNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTRGRGGYMKGIFISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVGSITFKNVM GANIDVAGNVSGIAESPFSTICLSNVTFFLSYELSPSWFCSNV | |||
| Full Sequence |
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| Protein Sequence Length: 407 Download |
| MTLNTVAFQN AIFYLKSFAD KGGAQLYVPS GTWLTGSFNL TSHLTLFLER GATILASQDY 60 SHWDVLDSLP SYGRGIGRYR SLIYGQSLSD VVVTGDNGTI NGQGSIWWTL FSSHSLNYSR 120 PNLVEFVDSV DVIISNLTFV DAPAWGIHPV YCSNVQIQNI TSRAPPESPY TSGIVPDSSK 180 YVCIENSNIS TGHDAIVLKS GWDEYGIAYG KPTSSVHISN VYLQSSSGAG LAFGSEMSGG 240 ISDIIAEKLH ILNSPIGIEL KTTRGRGGYM KGIFISDAEL ENIHLGISMT GYSGFHPDDK 300 YDTSALPVVG SITFKNVMGA NIDVAGNVSG IAESPFSTIC LSNVTFFLSY ELSPSWFCSN 360 VIGFSEKVIP EPCPDLQSSY SKYSFSCFTS LYPQFSNVSG SSDQEL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-13 | 4 | 373 | 387 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-17 | 2 | 344 | 363 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-19 | 70 | 390 | 336 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-23 | 89 | 319 | 237 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-47 | 2 | 283 | 312 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 2 | 374 | 52 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 2 | 387 | 75 | 464 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 2 | 387 | 140 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 2 | 374 | 54 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 2 | 391 | 52 | 443 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 6e-35 | 7 | 343 | 46 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 6e-35 | 7 | 343 | 46 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 6e-35 | 7 | 343 | 46 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 6e-35 | 7 | 343 | 46 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000003 | 33 | 317 | 52 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797919 | 360 | 2 | 357 | 0 |
| HO797483 | 391 | 2 | 388 | 0 |
| HO780931 | 320 | 13 | 326 | 0 |
| HO780931 | 59 | 326 | 384 | 0.0000000009 |
| HO797919 | 20 | 357 | 376 | 4.9 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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