Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G215900.1 |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 50232 Isoelectric Point: 7.1177 |
Chromosome | Chromosome/Scaffold: 01 Start: 47926927 End: 47929775 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 416 | 0 |
TACQSESAVNAILVPQGFSFLIQSTIFTGPCQSLMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSMEGSGLIDGRGEKWWDLPCKPHKGPNGTT LPGPCDSPIAIRFFMSSNLTVQGLRVKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCG PGHGISIGSLGNHNSRACVSNIMVRDSLIKVTENGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIVYTNIKGTYDI RSPPMRFSCSDSVPCTNLTLSEIELLPA |
Full Sequence |
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Protein Sequence Length: 461 Download |
MKHSPILPLA LSIFFLTLCL LVQARHHSHT KHKHSHSHKS SKHSNPAPPS PPHNENNNNA 60 SGVLDVRTFG AIGDGKTDDT ESFKMAWDTA CQSESAVNAI LVPQGFSFLI QSTIFTGPCQ 120 SLMVLKVDGT LMPPDGPESW PKNNSRHQWL VFYRINGMSM EGSGLIDGRG EKWWDLPCKP 180 HKGPNGTTLP GPCDSPIAIR FFMSSNLTVQ GLRVKNSPQF HFRFDGCKNV HIESIYITAP 240 KLSPNTDGIH IENTNDVKIY NSVISNGDDC VSIGSGCNDV DIKNITCGPG HGISIGSLGN 300 HNSRACVSNI MVRDSLIKVT ENGVRIKTWQ GGSGSVSGVT FNNIHMVSVR NPIIIDQFYC 360 LTKDCTNKTS AVSVSNIVYT NIKGTYDIRS PPMRFSCSDS VPCTNLTLSE IELLPAQGDI 420 VHDPFCWNAY GDLETLTIPP VSCLLEGTPQ SVLDFDITRC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-82 | 64 | 444 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-84 | 65 | 440 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-91 | 91 | 413 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-105 | 64 | 413 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-121 | 63 | 440 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 59 | 460 | 84 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 59 | 460 | 65 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 460 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 59 | 460 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 54 | 460 | 132 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-24 | 158 | 413 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-24 | 158 | 413 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-24 | 158 | 413 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-24 | 158 | 413 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-24 | 158 | 413 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |