Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.001G218400.1 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 51523.3 Isoelectric Point: 5.2668 |
Chromosome | Chromosome/Scaffold: 01 Start: 48101700 End: 48105547 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 416 | 0 |
ADKGGAKLFVPDGRWLTGSFDLISHLTLWLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGKRHKSLIYGRNLSDVIITGNNGTIDGQGSIWWSMFRNK TLDYTRPHLIELMNSTGVLISNLTFLNSPFWTLHPVYCSHVTVQKVTIFAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIRYGRPCT NIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHIEDIQFYDSHTAIRIKTSPGRGGYVRNIYVTNVTLANVDIAIRFTGLYGEHPDDAYDPKALPVIEKITI KDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVSSNYPWNCSYV |
Full Sequence |
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Protein Sequence Length: 466 Download |
MRRPSTLVDV LLVLALLSCS PWIVWSNTLC QETNDEVRPH SVSITEFGAV GDGVTLNTKA 60 FQNAIFYLNS FADKGGAKLF VPDGRWLTGS FDLISHLTLW LDKDAVILGS TNPEDWPVVD 120 PLPSYGRGRE LPGKRHKSLI YGRNLSDVII TGNNGTIDGQ GSIWWSMFRN KTLDYTRPHL 180 IELMNSTGVL ISNLTFLNSP FWTLHPVYCS HVTVQKVTIF APLDSPNTDG IDPDSSDNVC 240 IEDCYISTGD DLIAIKSGWD EYGIRYGRPC TNIIIHRLVG KTQTSAGIAI GSEMSGGVSE 300 VHIEDIQFYD SHTAIRIKTS PGRGGYVRNI YVTNVTLANV DIAIRFTGLY GEHPDDAYDP 360 KALPVIEKIT IKDVVGENIK TAGLIEGIEG DNFVNVCLSN IVLNVSSNYP WNCSYVKGYS 420 DLVLPEACEP LKERIFPEHC SDCYYLSNQI QSSKSQNRAG QRNFR* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 1.0e-24 | 43 | 340 | 306 | + polygalacturonase |
PLN02218 | PLN02218 | 3.0e-26 | 39 | 410 | 383 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 5.0e-29 | 146 | 380 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN03003 | PLN03003 | 8.0e-32 | 40 | 384 | 353 | + Probable polygalacturonase At3g15720 |
COG5434 | PGU1 | 5.0e-65 | 42 | 340 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 0 | 1 | 459 | 1 | 459 | unknown [Glycine max] |
EMBL | CBI37055.1 | 0 | 1 | 459 | 1 | 460 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 459 | 68 | 511 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 444 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 22 | 459 | 32 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.94273e-44 | 40 | 403 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.94273e-44 | 40 | 403 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.94273e-44 | 40 | 403 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.94273e-44 | 40 | 403 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-23 | 86 | 416 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |